Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00593 ATGGCATCGTTGGGATCTTCTTCGTCGTTCTGGTGCTATCGCTGCAACCGCGTCGTTAGGGTTTCCCTTGCATTAGAAGCGCAACCGGATCCTATTGTTCTCTGCCCCGATTGCCACTCCGGTTTCCTTGAGGAACTCCACACGCCTCCCCACTCGCGTCGATCCACGCGCGCCGGGTCCCCCTTCAATCCCGTGATCATGCTGCGCGGCGGGAACGGAAGCGAAATCGCAAACGCAAACGAAAACGACGTCGTCTCGGGGAACTTCGAGCTCTACTACAACGACGCAGTTTCCGGTCCTGGCCCGAGCGGCCTGCGGCCTCTGCCCGCGGGCGTGACCGACTTCCTCATGGGCTCGTCGGGCTTTGAACACCTTCTGGACCAACTCGATGGCACCGCGGTGCGCGTGGACCGGGCGGCGTCCAAGGCGGCGATCGAGTCGATGCCGGTGGTGAAGATCCTGGCGAGCCACGCGCACGCGGAGTCCCACTGCGCGGTGTGCATGGAAAATTTCGAAGTGGACTGCGACGCACGTGAGATGCCGTGCGGGCACGTGTACCACTCTGAGTGCATCGTGCCGTGGCTCTCGGTGCGGAACTCGTGCCCCGTGTGCCGCCACGTTGTTCCTTCCGATGAGGTCGATGATAACAATACGGTGGGGTTAACTATATGGAGACTCCCTGGTGGAGGATTCGCTGTCGGCAGGCTCATCGGAGGTAGAGAACTCCCGCTTGTGTACACGGAGATGGACGGCGCGTTTAACGGTGCTAACGGCGTTCCGAGGAGAGTCTCCTGGGATTCGTCTATTGGTAGGTCTAGGGAGAGTAGGGGGTTTGGTTCTGCTTTTCGGAATATCGTTTCGTATTTCGGAAGAGTTAGGAGTTCATTTTCTCGTGGAACGAGAAATTCGCGTGTCAATGGAAGATCTCGCTCTGCCACAACCATTTTTTCTAGGTTCAGGAGTGGATCAAGATTTTAA 978 0.5798 MASLGSSSSFWCYRCNRVVRVSLALEAQPDPIVLCPDCHSGFLEELHTPPHSRRSTRAGSPFNPVIMLRGGNGSEIANANENDVVSGNFELYYNDAVSGPGPSGLRPLPAGVTDFLMGSSGFEHLLDQLDGTAVRVDRAASKAAIESMPVVKILASHAHAESHCAVCMENFEVDCDAREMPCGHVYHSECIVPWLSVRNSCPVCRHVVPSDEVDDNNTVGLTIWRLPGGGFAVGRLIGGRELPLVYTEMDGAFNGANGVPRRVSWDSSIGRSRESRGFGSAFRNIVSYFGRVRSSFSRGTRNSRVNGRSRSATTIFSRFRSGSRF 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00593 325 SMART ring_2 164 204 IPR001841 -
Spst1g00593 325 SUPERFAMILY RING/U-box 144 211 - -
Spst1g00593 325 ProSiteProfiles Zinc finger RING-type profile. 164 205 IPR001841 -
Spst1g00593 325 FunFam E3 ubiquitin-protein ligase RING1-like 128 211 - -
Spst1g00593 325 Pfam Ring finger domain 163 205 IPR001841 -
Spst1g00593 325 Pfam zinc-ribbon 9 46 IPR039525 GO:0061630
Spst1g00593 325 Pfam Protein of unknown function (DUF1117) 219 316 IPR010543 -
Spst1g00593 325 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 93 208 - -
Spst1g00593 325 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 129 211 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g00593 Spst-Chr1 7733638 7734615 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g00593 107 214 C3H Transcription Factor Family AT5G01980 40.909 1.08e-20 90.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00593 K11982 - gmx:121172634 478.018
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g00593 1 7733638 7734615 Spst1g00593 1 7733638 7734615 ECH
Spst8g00382 8 3715161 3716450 Spst1g00593 1 7733638 7734615 ECH