Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00579 ATGTCAAAAACAATGATGGAGGAAGTAATGGCCACTTGGTCAGAGGGGTCAGAGGATGATGACCTTGTGAGAGAGCTTTTGGATGATGAGTCTCCCCTTCTTATGCTGCCACAGGAGGCAATTCAACCCCCCATCGCAAAAGCCTCTTCAAGTGACCATGCCTTTAATAGGTTCATCTCCAACATTTACTCAGGACCTACTATCTCAGATATTGAAAATGCTTTGTCAGTGACCAACCAAAGAGACCACCTCCCAACACTCTCATCAGCCAGAGTTTCCATTCTAGAGAGGGGTTTGAGTAAGATTGAGAATAAGTATACCCTGAAAATCAAATGCTTTGGCAATGGGATGGGAGATGATGGATATAAGTGGAGGAAGTATGGACAGAAATCCATTAAGAATAGCCCAAATCCTAGGAGTTACTATAGGTGCACAAACCCAAGGTGCAGTGCCAAGAAGCAGGTTGAGAGATCCATTGAGGACCCAGACACTCTTATCATAACCTATGAAGGACTCCACTTGCACTTTGCTTACCCATATTTCTTCATGGGCCAACCACAGCAGTCTCATTCCCATCCACCAATCAAGAAGTCCAAGCCCACCTCTCCACAGGCCCAATCCGAAGCCCACAGAGCTGATCATGTTCAGGAAGCCCAATCAAATGCTACTTCGGATGTGATGCCATCCACTTCATTGGAGTCTCCTCAAGACATGGGCTCACAGGGGTTGCTTGAAGATATGGTGCCATTCACGGTTCGGAACCCCAGAAACAATGTGAATAGTGGTCACACAAAATTCTCTTGTTCTTCCTATCGTTCTCCTCCAACGTCACCTCTGTGGAGTTCTAATTTCTCCACCTCCTGCTTAAATTCCAGCACCTAA 882 0.4603 MSKTMMEEVMATWSEGSEDDDLVRELLDDESPLLMLPQEAIQPPIAKASSSDHAFNRFISNIYSGPTISDIENALSVTNQRDHLPTLSSARVSILERGLSKIENKYTLKIKCFGNGMGDDGYKWRKYGQKSIKNSPNPRSYYRCTNPRCSAKKQVERSIEDPDTLIITYEGLHLHFAYPYFFMGQPQQSHSHPPIKKSKPTSPQAQSEAHRADHVQEAQSNATSDVMPSTSLESPQDMGSQGLLEDMVPFTVRNPRNNVNSGHTKFSCSSYRSPPTSPLWSSNFSTSCLNSST 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00579 293 SUPERFAMILY WRKY DNA-binding domain 116 175 IPR036576 GO:0003700|GO:0006355|GO:0043565
Spst1g00579 293 MobiDBLite consensus disorder prediction 253 293 - -
Spst1g00579 293 SMART WRKY_cls 118 177 IPR003657 GO:0003700|GO:0006355|GO:0043565
Spst1g00579 293 MobiDBLite consensus disorder prediction 187 209 - -
Spst1g00579 293 Pfam WRKY DNA -binding domain 119 175 IPR003657 GO:0003700|GO:0006355|GO:0043565
Spst1g00579 293 ProSiteProfiles WRKY domain profile. 113 178 IPR003657 GO:0003700|GO:0006355|GO:0043565
Spst1g00579 293 Gene3D WRKY domain 114 171 IPR036576 GO:0003700|GO:0006355|GO:0043565
Spst1g00579 293 FunFam WRKY transcription factor 105 179 - -
Spst1g00579 293 MobiDBLite consensus disorder prediction 216 238 - -
Spst1g00579 293 MobiDBLite consensus disorder prediction 187 293 - -
Spst1g00579 293 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 92 209 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g00579 Spst-Chr1 7593295 7596216 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g00579 6 254 WRKY Transcription Factor Family AT5G43290 42.066 3.69e-56 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Spst1g00579 WRKY 1.8e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00579 - - gmx:100803946 462.611
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g00579 1 7593295 7596216 Spst1g00579 1 7593295 7596216 ECH