Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00576 ATGGATCCACGTCTTTGTGGGATTAGTGGTCCCCCTAATGAAGTCTGGTTAGGAAATCAGAGATTTGAAAATGGATTCTTTGATCAAAGTAGGGAATTTGGTTACCTTCAATCCAATCTAGTACCAACTGACATGCCTTCTTCATCCTCGGTTTTGACTCATGAAGAACCTTCTCCGGAGGATTGTGAATTTTCTGATGCAATTTTGAGTTACATCAGTCAGATCCTTATGGAGGAAGACATGGAAGATAAGACATGCATGCTGCATGATTCTTTGGATCTTCAAATTGCTGAGCGATCATTCTATGAGGTGATAGGTGAAAAGTATCCTTCTTCGCCTTTAGGAAATCCAAATCCTGTTGATCCAGATGGTCGAGTGGGGGATCATATTTTCTCTGAAAATTATGGTACTTTGTCTTACAATGATGGTGATCTCAGTAGCATTTTTACTAATTTGCGTCAAAATTTGAGAGAACATCCTAACCAGAATTTACAAGTCAATAGCAATTCACAATCATCTTATAGCTCTTCAAATAGTGTGATAAGTAGTGTGGAAGGACTTGTGGACTCTCCAAGCAGTATTCTCCAGGTTCCTGATCTGAACAGTGAGAGTCAATCCATTTTGCAATTTCAGAAGGGTGTTGAGGAAGCTAGAAAGTTTCTTCCAAGTGGAAATGAGCTCTTTGCTAATATGGGGGTGGCTAATTCTTCAAAACTAGAGCCTAAAATGGGGAGGGATGAATTGCCAATTAAGGTGGAGAAGGATGTAAGGGAGTCTTTTCTTGCTGGAACCACAGGAAGGAAACATCACCTCATGGAAGAAGGGGATGTTGAAGAAAATAGATGCAGCAAGCAAGCTGCAATTTTCTCCGAACCTACATTGCCATCATCTACTATTGATATAATTCTGCTTCATAGTTTAGGGGATGGTAGGAAGCTTTTTATGGCCCGTCGTGAGGCTTTGCAAACCAAGAATGATAGGATAGCGCTGTCAAATGGTAAATCAAAGGCTTCCAACACTGGTAAGGGACGTAGCAAGAAACAAAGTGGGAAAAAGGAAGTGGTTGATTTGAGAACACTTTTGGTTCTTTGTGCACAAGCTGTTGCTGCAGATGACTATAATGGTGCAAATGAGTTTATAAAGCGAATCAGGAAGCACTCAAACCCTTTTGGGGATGGAAATCAGAGGTTGGCTCATATCTTTGCTGATGGCCTTGAAGCGCGCTTGGCTGGTACTGGTAGCCAAATTTATAAAGGACTTGTTAGTAAAAGAACATCAGCTGCTGATTTTCTGAAGGCTTATCATTTGTATCTTGCTGCTTGCCCTTTTAGGAAGATGTCTAGTTTTATATCTAATGTCACAATAAGGAAATCTTCAGCAAACTCAGCAAGGGTTCATGTTATAGATTTTGGTATCCTTTATGGTTTCCAGTGGCCTACTTTTATTCAGAGACTTTCATTGGCAGTTGGAGGACCAGCTAAACTTCGAATTACAGGAATAGACTTTCCACAACCTGGTTTCAGGCCTGCTGAGAGAATTCTAGAAACTGGACGCCGCTTGGCAGCATATGCTGAATCCTTTAAGGTGCCATTTGAGTATAATGCAATAGCAAAAAAATGGGAAACAGTTCAGCTTGAGGAACTAAAGATTGATAGGGATGAGTACCTTGTTGTTACGTGTGTTTATCGTGGTAAAAATGTGCTTGATGAATCTGTGGTCGCGGACAGTCCAAGGAACAAATTTCTCAGTTTGATAAGGAAGATCAACCCGGATTTATTCATTCATGGCATTACTAACGGGGCCTTTAATGCGCCTTTCTTCGTTACTCGGTTCAGGGAGGCACTGTTTCACTACTCTTCACTTTTTGACATGCTTGAAACTATTGTGCCTCAAGAGGACTGGGAGAGGATGCTAATTGAGAAAGAGATATTTGGCAGGGAAGCATTGAATGTCATAGCTTGTGAGGGCTGTGAGAGAGTAGAGAGGCCAGAGACATATAAGCAGTGGCAAGCCCGGATTCTTAGGGCTGGATTTTCGCAACAATCTTTTGAACATGCTTTAGTAAAGAGGGCAATAGAAAAAGTATCGGCTAGCTACCACAAGGATTTTGTTATTGATGAAGATAACCAGTGGTTGTTGCAGGGTTGGAAGGGGAGAATTATTTATGCCCTTTCTTGTTGGAAACCAGCATGA 2193 0.4122 MDPRLCGISGPPNEVWLGNQRFENGFFDQSREFGYLQSNLVPTDMPSSSSVLTHEEPSPEDCEFSDAILSYISQILMEEDMEDKTCMLHDSLDLQIAERSFYEVIGEKYPSSPLGNPNPVDPDGRVGDHIFSENYGTLSYNDGDLSSIFTNLRQNLREHPNQNLQVNSNSQSSYSSSNSVISSVEGLVDSPSSILQVPDLNSESQSILQFQKGVEEARKFLPSGNELFANMGVANSSKLEPKMGRDELPIKVEKDVRESFLAGTTGRKHHLMEEGDVEENRCSKQAAIFSEPTLPSSTIDIILLHSLGDGRKLFMARREALQTKNDRIALSNGKSKASNTGKGRSKKQSGKKEVVDLRTLLVLCAQAVAADDYNGANEFIKRIRKHSNPFGDGNQRLAHIFADGLEARLAGTGSQIYKGLVSKRTSAADFLKAYHLYLAACPFRKMSSFISNVTIRKSSANSARVHVIDFGILYGFQWPTFIQRLSLAVGGPAKLRITGIDFPQPGFRPAERILETGRRLAAYAESFKVPFEYNAIAKKWETVQLEELKIDRDEYLVVTCVYRGKNVLDESVVADSPRNKFLSLIRKINPDLFIHGITNGAFNAPFFVTRFREALFHYSSLFDMLETIVPQEDWERMLIEKEIFGREALNVIACEGCERVERPETYKQWQARILRAGFSQQSFEHALVKRAIEKVSASYHKDFVIDEDNQWLLQGWKGRIIYALSCWKPA 730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00576 730 ProSiteProfiles GRAS family profile. 348 728 IPR005202 -
Spst1g00576 730 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 280 722 IPR005202 -
Spst1g00576 730 MobiDBLite consensus disorder prediction 326 351 - -
Spst1g00576 730 MobiDBLite consensus disorder prediction 326 344 - -
Spst1g00576 730 Pfam GRAS domain family 357 728 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g00576 Spst-Chr1 7548058 7550250 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g00576 60 729 GRAS Transcription Factor Family AT2G37650 52.933 0.0 669
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Spst1g00576 GRAS 1.4e-108 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00576 - - gmx:100801824 1224.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g00576 1 7548058 7550250 Spst1g00576 1 7548058 7550250 ECH