Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00566 ATGGCTGCTACTCCAAAATCTTTCACCCCGAAGAAACCCTCCGACACCCTAATTTCGGTTTCCAAGGTGAGGGTCATCGTCAGAGTAAGACCCTTCCTCGAGCACGAAACCTCAGCAAAAAACGGCGAACCCGTTTCTTGTATCTCCGTCTTGGACCAAGATTTCGAGTTTCCGCGGGAAGAGGTTGCTGTTTATCTCAAAGACCCACAAACCAGTCGGAATGAGTGCTACCAGTTGGATTCTTTCTTTGGGCAGGAAGATAACAATGTGGGGCAGATATTCTGCAGAGAAGTGAGCCCCTTGATTCCGGGAATGTTCAGTGGATGCAATGCCACGGTGTTTGCTTATGGGGCTACTGGCAGTGGGAAGACATACACCATGCAGGGAACTGAGGAACAACCTGGCTTGATGCCACTGGCAATGTCTATGATCCTGTCTATTTGCCAGAGCACTGGCAGCACAGCACAGATCTCATACTATGAGGTCTACATGGACCGATGCTACGACCTTTTGGAGCTCAAAGAGAATGAGATTTCAGTTTTGGATGACAAAGATGGGCTAGTTCACCTCCGGGGACTGTCTCAGGTTCCTATAAACACAATGTCTGAATTTCAAGATGTTTTCTCTTGTGGAGTTCAGAGACGCAAAGTTGCACACACAGGCCTCAATGATGTCTCTAGTAGGAGTCATGGAGTGCTTGTGATATCTGTGTGCACTACTTCTTCTGATGGCACTGGAACTGTCGTATGTGGAAAGTTGAATCTCATAGACTTGGCAGGTAATGAGGACAACAGAAGGACCTGCAATGAAGGGATTCGTCTCCAAGAGAGTGCAAAGATAAAACAGTCCTTGTTTGCACTGTCAAATGTGATATATGCACTGAACAACAATAAACCTAGAGTACCCTACCGAGAAAGCAAATTGACCCGTATATTGCAGGACTCTCTAGGGGGAACAAGTCGTGCACTGATGGTTGCTTGCCTGAATCCAGGAGAATACCAGGAATCTGTTCACACTGTTAGTTTAGCTGCTCGATCAAGGCATGTCTCAAATTTTGTACCTTCAGCTCACAAACAAGAGACCCCAAAAGTTAAAGTTGACATGGAAGCAAAATTAAGAGCTTGGTTAGAATCAAAAGGAAAAACAAAGAGTACACAAAGACTTGGGCCATTTAATTCTCCACTTCCTAAAAAGACTCCCATTCCCATCGTTACCCCTGCTAAGAGATCCATTTCCTTTAACAGTTCAGTGAAGGGGGGAAGAACTGCCATCGACCTAGATACTAAACATACTAATGAAAGGGCTTTTGCTGTGGCTTTTGAAAATTTACTAGATGCTGAAGGTTCATTTGATTCATGCGTGGAGAATGCACCATCTGGTGTCAAGGACCATGATAACAAAGAGACTGAGCATCAAGCCAACAAGGCTGCATGGCAATCATACAAAAATCTACCTGCCGAGCCATTGAGAAAGGCAGTAAACTCAATAATTACTAATGAGAGTAAAGATGCAGCACAAAGTCCTTTAAGAAAAGCACTCTCCCCCATCAACATCAATGCTAATGAAAAACCCCTTGAGGCATTGTCTTTCACACAAACACCTTTTCTGGCAACCTGCTCCACTAATAAAGGGATACAAAAGAATGAGACTCCACTCGGAAAATTCAGCACACGCAGTTCTACATTGAAGACCTGTCTTGTCCAAGAATACCTTGATTTCTTAAATAATGCAAGCAGAGAGGAACTACTTGAGTTAAAGGGCATAGGAGAGAAAATGGCAGAATACATTATAGACCTCAGAGAAGAAAGTCCACTAAAATCGTTAAATGATTTGGAGAAGATAGGCCTCTCTACCAAGCAGGCCCATAACCTGTTCACAAAAGCTGCAAAAAAATTATTTGAAGATAAAGCTGAAGATTCAATACTCAGTTGA 1932 0.4363 MAATPKSFTPKKPSDTLISVSKVRVIVRVRPFLEHETSAKNGEPVSCISVLDQDFEFPREEVAVYLKDPQTSRNECYQLDSFFGQEDNNVGQIFCREVSPLIPGMFSGCNATVFAYGATGSGKTYTMQGTEEQPGLMPLAMSMILSICQSTGSTAQISYYEVYMDRCYDLLELKENEISVLDDKDGLVHLRGLSQVPINTMSEFQDVFSCGVQRRKVAHTGLNDVSSRSHGVLVISVCTTSSDGTGTVVCGKLNLIDLAGNEDNRRTCNEGIRLQESAKIKQSLFALSNVIYALNNNKPRVPYRESKLTRILQDSLGGTSRALMVACLNPGEYQESVHTVSLAARSRHVSNFVPSAHKQETPKVKVDMEAKLRAWLESKGKTKSTQRLGPFNSPLPKKTPIPIVTPAKRSISFNSSVKGGRTAIDLDTKHTNERAFAVAFENLLDAEGSFDSCVENAPSGVKDHDNKETEHQANKAAWQSYKNLPAEPLRKAVNSIITNESKDAAQSPLRKALSPININANEKPLEALSFTQTPFLATCSTNKGIQKNETPLGKFSTRSSTLKTCLVQEYLDFLNNASREELLELKGIGEKMAEYIIDLREESPLKSLNDLEKIGLSTKQAHNLFTKAAKKLFEDKAEDSILS 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00566 643 FunFam Kinesin-like protein 19 389 - -
Spst1g00566 643 Pfam Helix-hairpin-helix motif 574 614 - -
Spst1g00566 643 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 22 375 IPR027417 -
Spst1g00566 643 Gene3D - 560 631 - -
Spst1g00566 643 MobiDBLite consensus disorder prediction 383 402 - -
Spst1g00566 643 Gene3D Kinesin motor domain 19 389 IPR036961 -
Spst1g00566 643 ProSiteProfiles Kinesin motor domain profile. 22 349 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Spst1g00566 643 PRINTS Kinesin heavy chain signature 108 129 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Spst1g00566 643 PRINTS Kinesin heavy chain signature 252 270 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Spst1g00566 643 PRINTS Kinesin heavy chain signature 301 322 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Spst1g00566 643 PRINTS Kinesin heavy chain signature 220 237 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Spst1g00566 643 Pfam Kinesin motor domain 28 349 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Spst1g00566 643 CDD KISc_KID_like 23 347 - -
Spst1g00566 643 FunFam Kinesin-like protein KIN-10C 560 632 - -
Spst1g00566 643 ProSitePatterns Kinesin motor domain signature. 251 262 IPR019821 GO:0003777|GO:0005524|GO:0007018
Spst1g00566 643 SMART kinesin_4 20 357 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Spst1g00566 643 PANTHER CHROMOSOME-ASSOCIATED KINESIN KIF4A-RELATED 21 377 IPR027640 GO:0003777|GO:0007018
Spst1g00566 643 SUPERFAMILY RuvA domain 2-like 567 614 IPR010994 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g00566 Spst-Chr1 7313510 7317681 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g00566 22 381 Calmodulin-binding Proteins AT5G65930 32.432 1.01e-45 173
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00566 K10403 - gmx:100804591 1095.49