Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00560 ATGCCTTCTTCGTTTTCTTCTTCTTCGTCCGTTCTAACCATTCCCAATCTCCGTCTTCGCGCGCTCAGAATTTGGTCCTCCAAGGACTACGCAATCGCCGCATTCGTCTTCCTCCTCCTCTTCTCCCTCATTCTCTTCTCCCACTTGGATTCTCGTTCCCGTTCCCGTTACCCCTCCCACCCCAGCTCCACCCTCGTTCCCTTGACGCTTCTCCGTAACGCCAACCGAACGCGCGCGTTTTGCTTGGACGGGAGCGCCCCCGGTTACCACTTCCGGAGCGGGTTCGGATCGGGATCTCGCAATTGGTTGCTCCACATTGAGGTGAAGATACGCTATTGTGATGGTGCATCTTTTGCTGGTCACCCGGAGAGTGAGCAAAGAGGAAGTGGGTTGTTTTTCAGAGGCCAGGTCATATGGGAAGCTATTATGGATGAACTCTTATCAATTGGCCTATCCAAAACAAAGCAGGCGTTGCTCTCAGGATGCTCTGCTGGAGGGTTGGCAACTCTTATACACTGTGATAACTTCCGAAAAGTACTTCCAAAAGAAGCAACTGTAAAGTGCCTTGCTGATGCAGGCTTCTTCCTAGATGAGAAGGATATTAGTGGAAATAGTACAATGAGATCTTTCTATCATGATGTTACCCAGCTTCAGGGTGTTGCAAAAAGTTTGCACAAAGATTGCATTGCTAAAATGGAACCATCTAAGGCAGCTTATGATTTCTGGCAGGATCAGATCCCCTTGGTCACTGGCAAAACTGCAGGCTGA 768 0.4948 MPSSFSSSSSVLTIPNLRLRALRIWSSKDYAIAAFVFLLLFSLILFSHLDSRSRSRYPSHPSSTLVPLTLLRNANRTRAFCLDGSAPGYHFRSGFGSGSRNWLLHIEVKIRYCDGASFAGHPESEQRGSGLFFRGQVIWEAIMDELLSIGLSKTKQALLSGCSAGGLATLIHCDNFRKVLPKEATVKCLADAGFFLDEKDISGNSTMRSFYHDVTQLQGVAKSLHKDCIAKMEPSKAAYDFWQDQIPLVTGKTAG 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00560 255 PANTHER NOTUM-RELATED 41 107 IPR004963 GO:0016787
Spst1g00560 255 Pfam Pectinacetylesterase 108 236 IPR004963 GO:0016787
Spst1g00560 255 Pfam Pectinacetylesterase 62 107 IPR004963 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g00560 Spst-Chr1 7270267 7275164 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g00560 12 249 Carbohydrate Esterase AT3G09410 44.762 1.45e-76 235
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00560 K19882 - gmx:100792819 373.629