Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00556 ATGTCCCCAGCAGGTTCTTCAAGATGGAGCCCTACCACAGAACAACTGATGATCTTGGAGGAACTGTACAGGAGTGGCATTAGAACTCCTAGTGCCTCTCAAATTCAGCAAATAACCACACACCTCTCTCTCTATGGAAGGATAGAGGGAAAGAATGTGTTCTACTGGTTTCAGAACCACAAGGCTAGGGATAGACAGAAGCTCAGAAGGAAACTCAGCAAGCAACTGCAGCTACAGCAACAGCTCCAAGTCCATCATTGCCAAATCAATCCAGATATCACTAATCACTATGTTGGCACCTTTGGTTATACTCCTCGTCCTTCAACCCAGGATTTTCCCTTTTTTAACTCACCTACCTTGCTTTTTCAGGGAGGAGCTGCAAACACATCTGAACAGGCATTGAATTGCACATGGAATGTGCACAACCCACAGAGTAATGTTGTGGAGAAGGAAGAGGTGACATGCTACAACTATGATCCAAGTACACTAGTGGATGTTAACAACCAAGCATCTTCATGTTGCACTTCTCGACCTCTCAAGACCCTTGACCTCTTTCCACTCACAACCACCAGAATCACTGAAGACTGCACCACACCACCCAATCAGCCCTAA 612 0.4575 MSPAGSSRWSPTTEQLMILEELYRSGIRTPSASQIQQITTHLSLYGRIEGKNVFYWFQNHKARDRQKLRRKLSKQLQLQQQLQVHHCQINPDITNHYVGTFGYTPRPSTQDFPFFNSPTLLFQGGAANTSEQALNCTWNVHNPQSNVVEKEEVTCYNYDPSTLVDVNNQASSCCTSRPLKTLDLFPLTTTRITEDCTTPPNQP 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00556 203 FunFam WUSCHEL-related homeobox 4 6 73 - -
Spst1g00556 203 Pfam Homeodomain 7 66 IPR001356 GO:0003677
Spst1g00556 203 SMART HOX_1 4 71 IPR001356 GO:0003677
Spst1g00556 203 CDD homeodomain 8 67 IPR001356 GO:0003677
Spst1g00556 203 ProSiteProfiles 'Homeobox' domain profile. 2 67 IPR001356 GO:0003677
Spst1g00556 203 SUPERFAMILY Homeodomain-like 5 69 IPR009057 -
Spst1g00556 203 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 2 194 IPR044555 GO:0003700|GO:0099402
Spst1g00556 203 Gene3D - 3 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g00556 Spst-Chr1 7249769 7250846 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g00556 1 74 Wox Gene Family AT2G28610 82.432 1.16e-40 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Spst1g00556 Homeodomain 6.1e-18 CL0123