Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00541 ATGGCGGAAACCGACCCTTCGTGGGCGCTCCGCAACCTCACCCGCGTCGCCACCCAAATCTCCAACCTCTCCGCCTTCAAGCCCCTCCTCAGGACCCAATGCTGCGACCTCGCTCGCCGCATACGCTTCCTCGCTCCTCTCTTCCTCGAATTGCACGACGACGTCTTGTTGAGTGGTGCTGTTTCCTTCCACGCGCTCCAGGACGCTCTCTTCAAGGCCAGGGATTTGCTCCAATTCGCAACCTGCGCAAGCCAGGTTTACATGATACTGGATAGAGAGCAAGTTAAGCACAGATTCACTGATGTTGCTGTTCGTTTTGAACATGCTATAAGCAAGATATCCATTGACGAGGTTGATGTTTCTGAAGAAATTAAGGAACAGGTTGCACTTGTGACCACTCAGTTTAGAAGAGCTAAAGAGCAGTTCGACCCACCGGGTCTTCAGCTTTATGAGCAACTTCTGTCTATTTACAACCAGAGTAATGATGAGCATACTGAAACTTCTGAACTACGTTTAATCTGTGAAAAGCTACAATTTATCAATGTGGATGACGTTAAGCAAGATTCACTTGCTCTAGAAAAGATGGTTGTAGAGAGGGGGGCTCATTCTCAAAAAAGCATACATGAAATGTCTTTAGTTCTGCTGAAAAAAATCCAAGATTTCTTAATAGTGGATTCAGGAAACAATATTGTGTCTCCAAGTGAAGATTTATCTCAACATACCGATGAGTCATACCTGAAACTATGTCCACAACCATTGGTTATACCTGATGAGTTTCGCTGCCCAATATCTCTAGAGCTAATGAAAGATCCTGTTATCATTTGCACAGGGCAGAAGTTCAGAAAGTATTATGACTAA 858 0.4499 MAETDPSWALRNLTRVATQISNLSAFKPLLRTQCCDLARRIRFLAPLFLELHDDVLLSGAVSFHALQDALFKARDLLQFATCASQVYMILDREQVKHRFTDVAVRFEHAISKISIDEVDVSEEIKEQVALVTTQFRRAKEQFDPPGLQLYEQLLSIYNQSNDEHTETSELRLICEKLQFINVDDVKQDSLALEKMVVERGAHSQKSIHEMSLVLLKKIQDFLIVDSGNNIVSPSEDLSQHTDESYLKLCPQPLVIPDEFRCPISLELMKDPVIICTGQKFRKYYD 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00541 285 Pfam U-box domain 255 278 IPR003613 GO:0004842|GO:0016567
Spst1g00541 285 PANTHER U BOX DOMAIN-CONTAINING 31 281 - -
Spst1g00541 285 SUPERFAMILY RING/U-box 255 280 - -
Spst1g00541 285 Gene3D - 9 116 IPR036537 GO:0007166
Spst1g00541 285 ProSiteProfiles U-box domain profile. 254 285 IPR003613 GO:0004842|GO:0016567
Spst1g00541 285 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 251 285 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g00541 Spst-Chr1 6984580 6986575 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g00541 3 282 U-box Gene Family AT3G46510 34.495 4.79e-53 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00541 - - pvu:PHAVU_008G099600g 457.218