Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00539 ATGGTTTATACTTCCATCCCAGCATATATTGATCCAGCCAACTGGCAGCAACAGCAACCAAATCACCAGCAGCAAGGCAACAACACTGCTGCCAGCTCCCACCTTATTCTTCCACCACCTATACAACCGCCGCCGCCTCCGCCGTCACAACCTCATGGACTCGGCGGTTCGATGGGTAGTGCTACTGCCGGGTCCATCAGGCCAGGTTCGATGGCGGATAGGGCCAGGATGGCCAACATACCCATGCAGGAAGCTCCACAAAAGTGTCCAAGATGTGACTCCACCAATACAAAGTTTTGCTACTTCAACAACTACAGCCTCTCTCAGCCCCGCCACTTCTGCAAGGCCTGCAGAAGGTACTGGACTCGTGGCGGGGCCTTGAGGAACGTCCCTGTTGGCGGCGGCTGCAGGAGGAATAAGAGGAGCAGAGGAAGCTCCGGCAGCAGCGCCAGGTCTCCGGCAAACTCCGATCGCCAAACGGCGAGTGCTGGCTCCGCTTCCACAACCAGTGGCTCTTCTTCTGCTGACATGGTGGCAGGCCTTGGCGGCACCGGAGTGCCTTCGTCTCTTAGATTCATGGCTCCATTGCATCATCTTGGCGATCACCACCTTGGTGGTGGTGGTGGAGGAGAAATAGGGTTAAACTATGGCTTGAACTATGGCGCAATTTCAGGTCCAATGGGAGGGATAGGGGACTTGAATTTCCACATAGGAAGCGCTTTGAATGTTGGTGGTTCTGTGTTGTCTGGTTTGGACCAATGGAGGATGCCACAAACTCACCAATTTCCCTTCTTGTCTGGTTTGGATGCTTCCTCATCACATGGGTTGTACCCATTTGATGGTGCTAGTGGCAGTGACGGCTATGGTGGCAATCCCATCAAGGTTTCAACTTCTGGGTTGATGTCTCAGCTTGCTTCTGTGAAAATGGAAGATAATAATCAGGAGCTTGGTATGCCTAGACAGTTCTTGGGTGTTAATAATAACCCTAATACAAATGAGCAATATTGGAGTGGTGGTGGTGGTGGTGCCACTTCTGCTTGGACTGATCTTTCTGCTTTTAGCTCTTCTTCCACTACTAGTAACCCACTATAG 1092 0.5201 MVYTSIPAYIDPANWQQQQPNHQQQGNNTAASSHLILPPPIQPPPPPPSQPHGLGGSMGSATAGSIRPGSMADRARMANIPMQEAPQKCPRCDSTNTKFCYFNNYSLSQPRHFCKACRRYWTRGGALRNVPVGGGCRRNKRSRGSSGSSARSPANSDRQTASAGSASTTSGSSSADMVAGLGGTGVPSSLRFMAPLHHLGDHHLGGGGGGEIGLNYGLNYGAISGPMGGIGDLNFHIGSALNVGGSVLSGLDQWRMPQTHQFPFLSGLDASSSHGLYPFDGASGSDGYGGNPIKVSTSGLMSQLASVKMEDNNQELGMPRQFLGVNNNPNTNEQYWSGGGGGATSAWTDLSAFSSSSTTSNPL 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00539 363 MobiDBLite consensus disorder prediction 37 52 - -
Spst1g00539 363 ProSiteProfiles Zinc finger Dof-type profile. 87 141 IPR003851 GO:0003677|GO:0006355
Spst1g00539 363 MobiDBLite consensus disorder prediction 131 180 - -
Spst1g00539 363 ProSitePatterns Zinc finger Dof-type signature. 89 125 IPR003851 GO:0003677|GO:0006355
Spst1g00539 363 Pfam Dof domain, zinc finger 86 141 IPR003851 GO:0003677|GO:0006355
Spst1g00539 363 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 51 169 IPR045174 GO:0003700|GO:0006355
Spst1g00539 363 MobiDBLite consensus disorder prediction 16 68 - -
Spst1g00539 363 MobiDBLite consensus disorder prediction 141 177 - -
Spst1g00539 363 MobiDBLite consensus disorder prediction 16 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g00539 Spst-Chr1 6946483 6947740 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g00539 1 356 C2C2-Dof Transcription Factor Family AT2G37590 41.129 6.18e-65 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Spst1g00539 zf-Dof 3.5e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00539 - - gmx:100796820 524.628