Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00536 ATGGCTGAAGGCACAAAATCCGGAGGTGAGGCTAAGAAACAAGCGGCACGAGATCTTGAATTTGTTGAGATGGAGTGTGAAGTTGAGTTACAAGGGGGAGATCTGCATGCAGAGGTGGTAGCTGAACCAAACCCTGTTGGTTTTGGCACCACCATGGAAGGCGAACCCACTTTGTCGGTTGCTGAGAGAGAGATGTGGCTGAATAGTGACCAAGACGAGTTTCTAGGAGTCAATGATACTTCCATGTTCTACGCTGATTTCCCTCCTCTCCCTGATTTCCCTTGCATGTCGTCATCGTCGTCTTCATCTTCCGCACCACCACTTCCTGTGAAAACCATGACATGTTCCACCACAACCACCACCACAACAACCACCACTGCGACTTCCTCTTCTTCCTCTTCCTCTTCATGGGCCGTGTTGAAGTCAGATGTCGAGGAAGATGTGGAGAAAAACCATTGCAACGGCCACATGCATGACCAATTTGATGCAACAGCCTTGTCTTCCACTGCTTCCATGGAGATCTGCCAGCAGCAAAATCCGGATCCTGGCCTCGGTGCCTCTGTTGGAGAGTGCATGGAGGATGTTATGGACACTTTTGGGTACATGGAGCTTTTAGAGGCCAATGATTTCTTCGACCCTGCCTCAATCTTTCAGACTGAGGAAAACGACAATCCTTTAGGGGAATTTGGCACAATGGAAGAACAGGTCTCACCGCAAGAAGAGCAACAGGATATGGTGCATCAGCAAGGTAACAACACAAAAGAGGACCATCAGGTTCCCGTATGTGAAGAGATTCAAGGAGATGAAGAAGGTGGTGACGGTCGTGGTGGTTTAGTAGATGATGAAATGAGTAATGTCTTCTTGGAGTGGCTCAAATCTAACAAAGATAGTGTTTCTGCTAACGACTTGAGGAATGTGAAGCTCAAAAAGGCAACGATTGAAAGCGCAGCAAAGCGTTTGGGGGGAGGAAAAGAAGCTATGAAACAATTGCTAAAGCTGATTCTTGAGTGGGTTCAGACCAGCCATCTTCAGAATAAACGGCGCAAGGAGAATAGCGGCAACATTAATAATGCTCTTCAGTCACAGTTTCAGGATCCTAGTGGCCAGAACAACCAGAACACAAATACTAGTGGCTCATTTGCACCTGAGTCGAACTCTTGTTTAAACAACCACACACCCTGGTTGAGTCCTCAAACTTTTGGGACGGATCAGGCCCCTCTCATGGTGCCATCACAGCCATATTCACAACCCATGGTTGGGTATGTGGGTGACCCTTACACTAGTGGTTCTGCTTCAAATAACATTACACCCACTCATAACCATAACAACAACCCTTACCAACCTGGCACGGACCAGTATCACATGTTGGATTCAGCTCACTCATGGCCTCATTCCCAGTTTAATGTTGCTTCTCACTACAGCCAGTCTTATGGGGATAATGGTATTTTCCCACATGGGGGTTTTGGCGGCTACAGTAATAATCAGTACCCTTATCAGTTTTTTCATGGTCCTGGTGATAGGTTGATGAGGTTAGGCCCCTCGGCGACCAAGGAAGCAAGGAAGAAGAGAATGGCAAGGCAGAGAAGGTTTGTATCTCATCACAGGAATCACAGCAACAATCACCACCAGAATCAAGGGTCTGACCCACAGGCAAGACTGGGAAGTGATAATTGCACCACTGGTTTGGTTGCACCGCATCATGCAAATCCTGCAGCAGCCAATTGGATGTACTGGCAAGCTATGACGGGTGGCGCGGCCGGTCCTTTGGCGCCAGTGATTCCATCCGAGCCAACGGCCGGACAACCGATGGTGGACCGGCCCACCATGCAGACACAGATTTCTCACCAAAATAGAGCTGCATCAGATAGAAGACAGGGCTGGAAGCCTGAGAAGAACTTGAGGTTCCTCCTGCAAAAGGTGTTGAAGCAAAGCGATGTGGGAAGTTTGGGGAGAATAGTTTTGCCAAAAAAAGAAGCAGAAACCCATTTGCCAGAGCTGGAAGCAAGAGATGGAATTTCCATAACAATGGAAGACATTGGAACTTCACGTGTTTGGAACATGCGCTATAGATACTGGCCAAACAACAAAAGCAGAATGTATTTGCTCGAGAACACTGGTGACTTTGTGAGAGCCAATGGACTCCAAGAAGGAGATTTCATAGTCATATACTCAGATGTGAAGTGTGGCAAATACATGATAAGAGGAGTGAAAGTGAGGCAACAAGGTGTGAAACCAGAGACCAAGAAAGCAGGAAAATCGCAGAAAAACCAGCATGGGACTCATGCATCAAATACAGCTGGAACTGCTGCTAATAATGGCAGGTCATCGTCACCCAAACCAAAAGCTGAAAAAAAATGTTTAAGGTTGAAGGAGCCGTGTGAATACCGTCTCTTGAAGGAAGAAGATGATTTGGTGTCAGGAATGGATTAA 2430 0.4712 MAEGTKSGGEAKKQAARDLEFVEMECEVELQGGDLHAEVVAEPNPVGFGTTMEGEPTLSVAEREMWLNSDQDEFLGVNDTSMFYADFPPLPDFPCMSSSSSSSSAPPLPVKTMTCSTTTTTTTTTTATSSSSSSSSWAVLKSDVEEDVEKNHCNGHMHDQFDATALSSTASMEICQQQNPDPGLGASVGECMEDVMDTFGYMELLEANDFFDPASIFQTEENDNPLGEFGTMEEQVSPQEEQQDMVHQQGNNTKEDHQVPVCEEIQGDEEGGDGRGGLVDDEMSNVFLEWLKSNKDSVSANDLRNVKLKKATIESAAKRLGGGKEAMKQLLKLILEWVQTSHLQNKRRKENSGNINNALQSQFQDPSGQNNQNTNTSGSFAPESNSCLNNHTPWLSPQTFGTDQAPLMVPSQPYSQPMVGYVGDPYTSGSASNNITPTHNHNNNPYQPGTDQYHMLDSAHSWPHSQFNVASHYSQSYGDNGIFPHGGFGGYSNNQYPYQFFHGPGDRLMRLGPSATKEARKKRMARQRRFVSHHRNHSNNHHQNQGSDPQARLGSDNCTTGLVAPHHANPAAANWMYWQAMTGGAAGPLAPVIPSEPTAGQPMVDRPTMQTQISHQNRAASDRRQGWKPEKNLRFLLQKVLKQSDVGSLGRIVLPKKEAETHLPELEARDGISITMEDIGTSRVWNMRYRYWPNNKSRMYLLENTGDFVRANGLQEGDFIVIYSDVKCGKYMIRGVKVRQQGVKPETKKAGKSQKNQHGTHASNTAGTAANNGRSSSPKPKAEKKCLRLKEPCEYRLLKEEDDLVSGMD 809
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00536 809 MobiDBLite consensus disorder prediction 542 557 - -
Spst1g00536 809 Pfam B3 DNA binding domain 638 734 IPR003340 GO:0003677
Spst1g00536 809 ProSiteProfiles B3 DNA-binding domain profile. 637 739 IPR003340 GO:0003677
Spst1g00536 809 MobiDBLite consensus disorder prediction 519 558 - -
Spst1g00536 809 CDD BfiI_C_EcoRII_N_B3 635 736 - -
Spst1g00536 809 MobiDBLite consensus disorder prediction 741 785 - -
Spst1g00536 809 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 290 775 IPR044800 GO:0003700
Spst1g00536 809 MobiDBLite consensus disorder prediction 521 540 - -
Spst1g00536 809 SMART B3_2 637 739 IPR003340 GO:0003677
Spst1g00536 809 MobiDBLite consensus disorder prediction 756 777 - -
Spst1g00536 809 MobiDBLite consensus disorder prediction 358 411 - -
Spst1g00536 809 SUPERFAMILY DNA-binding pseudobarrel domain 636 732 IPR015300 -
Spst1g00536 809 Gene3D - 633 752 IPR015300 -
Spst1g00536 809 FunFam B3 domain-containing transcription factor FUS3 633 748 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g00536 Spst-Chr1 6852664 6857614 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g00536 63 770 B3 DNA Binding Superfamily AT3G24650 46.215 3.02e-164 492
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Spst1g00536 B3 4.2e-18 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00536 K09287 - gmx:100795226 1191.79
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g00536 1 6852664 6857614 Spst1g00536 1 6852664 6857614 ECH