Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00535 ATGTCAATGCCGAGGCAAGCCTTGAGCAACCAAAACCACAACCAAATGTCGAGGCAAGCTTTCATCACAGACCATCACCATCTCCATCACCCTCACCTGCACCACCTTCACTACCTTCACTATGCTCTTCTCTTTGCTCTTCTTCTTCCTCTTTCCTTTGCTGCCAATGATGAAGTTAGTGCACTGGTTTCATGGATGCATAGCTCCTCCAAAACTCCTTCAGCTTTTTCTACTTGGAACCCTTTGGACTCCAATCCTTGCAGTTGGTCTTACATCAAATGCTCTTCAGCAAACTATGTCACAGAGATAACCATTCAAAATGTTGAACTAGCCTTTCCCTTCCCTCCAAAAATCTCATCCTTTCCTTTCCTTCAAATATTGGTTATTTCTGCGGCTAACCTCACTGGGACTATCTCACCTGACATTGGAAACTGTTCTGAGCTAATACTCCTTGACCTTAGCTCCAATAGTCTTGTGGGTAGCATTCCTTCAAGTATTGGGAGGCTCAAAAACCTCCAAAACTTGAGCTTGAACTCCAACCATCTCACAGGGCCAATTCCAAGTGAGCTAGGTGACTGTGTCAATCTCAAGACCCTTGACATCTTTGACAACAGCCTTAGTGGGGATCTTCCTGTGGAGCTAGGAAAGCTGTCAAATCTGGAGGTTATAAGAGCAGGAGGGAACAGTGGCATTGTGGGGAAGATTCCAGATGAGCTAGGAGATTGCAGAAATTTGACAGTTTTGGGTCTTGCTGACACAAAAATTTCTGGTTCATTGCCCGCTTCACTAGGTAAGCTAAGTAGGCTTCAGACCTTGTCTATTTATAGTACTATGCTCTCTGGTGAGATTCCTCCTGAAATAGGGAACTGTTCAGAGCTTGTCAACTTGTTTTTGTATGAGAATGACCTCTCAAGTTCCCTGCCAAGAGAGATTGGTATGCTTCAGAAGCTGGAAAAGATGCTGCTGTGGCAAAACAATTTTGTTGAGGGCATTCCTGAGGAAATTGGCAACTGCAGAAACTTGAAGATTCTTGATGTTTCCTTAAATTCTCTCTCTGGTGTAATACCCGAAAGTTTGGGGAAACTCTCAAATCTTGAAGAACTTATGCTGAGTAACAATAACATTTCTGGTTCAATACCACCAGCTCTGTCCAATCTCACAAACCTCATACAGTTGCAGTTGGATACTAATCAGCTATCAGGTTCAATTCCACATGAGCTTGGAAGATTGACAAAGCTAACAGTCTTTTTTGCTTGGCAGAACAAACTTGAAGGTGGCATTCCATCATCGCTGGGAGGTTGTAGAAGCCTTGAGGCTTTGGATTTGTCGTACAATGCACTCACTGATAGCTTACCCCCAGTCCTGTTTAAACTTCAAAATTTAACAAAGCTTCTGCTAATATCTAATGATATTTCTGGCCCTATCCCTCCTGAGATTGGCAACTGTAGTTCCCTCATTCGCCTCCGGCTTGTAGACAACAGAATCAGTGGGGAGATACCGAGAGAAATTGGCTTCCTTAACAGTCTTTATTTCCTTGATCTCTCTGAAAATCAGCTTACTGGGTCAGTACCACTTGAGATTGGAAACTGTAAAGAACTGCAAATGCTGAATCTAAGCAACAACTCCCTTTCTGGCTCTTTGCCTAGTTATTTGTCTTCTCTCACAAGGCTAGAGGTCTTGGATGTTTCCATGAATAATTTTTCTGGTGAGGTTCCAATGGGTATTGGCCAACTCACCTCACTTCTTAGAGTCATCCTAAGCAGAAACTCTTTCTCTGGGCCAATTCCCTCCTCAATTGGGAAATGTTCAGGTCTTCAGCTGCTAGATCTTAGCAGCAACAATTTCACAGGGAGCATCCCACCACAACTGCTTCAAATTGAAGCACTTGATATTTCCCTAAATCTGAGTCACAATGCATTATCTGGAGTGATCCCACCAGAGATATCCTCTTTGAACAAGCTGTCAGTTCTAGACCTTTCACACAACAATCTTGAAGGTGACTTGATGGCCTTTTCAGGGCTCGAAAATCTTGTTTCTCTGAACATTTCCTACAACAAGTTCACTGGTTATCTACCAGACAGCAAGTTATTCCACCAACTATCAGCAACAGAATTGGCCGGAAACCAAGGTTTGTGTCCTAACGGTCATGATTCATGTTTTGTTAGCAATGCTGCTATGACAAAAATGCTGAATGGTACTAATTCTAAGAGGTCAGAGATAATCAAACTGGCTATTGGACTGCTCAGTGCCTTGATTGTTGCAATGGCAATCTTTGGAGTTGTGACTGTCTTTCGAGCAAGGAAAATCATTCAGGCAGACAATGATTCTGAGATGGGAGGAGATTCATGGCCTTGGCAATTCACCCCATTCCAAAAGGTAAATTTCTCTGTGGAGCAAGTCTTGAAGTGTTTGATAGAATCCAATGTAATTGGAAAGGGTTGTTCAGGGATTGTTTATCGCGCCGAAATGGAAAATGGAGATGTCATTGCTGTGAAAAGGCTATGGCCAACAACAATAGCTGAAAAATGTGATAACCGAAGTGACAAGTTAGCAGTTAATGGAGGGGTACGTGATTCCTTTTCAGCTGAAGTAAAAACTCTTGGTTCAATTCGCCACAAGAACATTGTAAGGTTCCTGGGTTGCTGTTGGAACAGAAACACAAGATTGCTTATGTATGACTACATGCCAAATGGGAGTCTAGGAAGTCTACTTCATGAACGAAGTGGTAACTGCTTGGAATGGGACATAAGGTTTCGGATAATACTAGGAGCAGCACAAGGTGTGGCTTATTTGCACCACGATTGTGCTCCTCCCATTGTTCATAGGGACATCAAGGCCAACAACATCCTCATAGGCCCTGAATTTGAACCGTACATAGCTGATTTTGGGCTTGCAAAACTTGTTGATGATAGAGATTTTGCGCGATCTTCTAGCACACTAGCTGGTTCCTATGGTTACATTGCTCCTGAGTATGGGTACATGATGAAGATAACAGAAAAAAGCGATGTTTATAGCTATGGCATTGTGGTACTAGAAGTCCTAACTGGGAAGCAACCGATTGATCCAACAATACCTGATGGACTCCACATTGTTGATTGGGTGAGACAGAAAAGAGGTGGAGTTGAAGTGCTGGATGAAAGCTTGAGAGCTCGGCCAGAATCTGAAATTGAGGAAATGTTGCAGACCTTAGGAGTGGCTTTGCTGTGTGTGAACTCAAGCCCAGATGACAGACCAACCATGAAAGATGTTGTAGCAATGATGAAGGAAATTAGGCAGGAGAGAGAGGAATGTGTGAAAGTTGACATGCTTCTTCATGCATCTTCTGCAAATGATCAACAAGAAAGAAATCTTCCTAATGAAGAACCAATGTCAATGATAAGCACCAGCAGCACAAATCTGCATCTGCATTACTCTCCCCATCGCCCTCAGACACCAAAGTAA 3441 0.4298 MSMPRQALSNQNHNQMSRQAFITDHHHLHHPHLHHLHYLHYALLFALLLPLSFAANDEVSALVSWMHSSSKTPSAFSTWNPLDSNPCSWSYIKCSSANYVTEITIQNVELAFPFPPKISSFPFLQILVISAANLTGTISPDIGNCSELILLDLSSNSLVGSIPSSIGRLKNLQNLSLNSNHLTGPIPSELGDCVNLKTLDIFDNSLSGDLPVELGKLSNLEVIRAGGNSGIVGKIPDELGDCRNLTVLGLADTKISGSLPASLGKLSRLQTLSIYSTMLSGEIPPEIGNCSELVNLFLYENDLSSSLPREIGMLQKLEKMLLWQNNFVEGIPEEIGNCRNLKILDVSLNSLSGVIPESLGKLSNLEELMLSNNNISGSIPPALSNLTNLIQLQLDTNQLSGSIPHELGRLTKLTVFFAWQNKLEGGIPSSLGGCRSLEALDLSYNALTDSLPPVLFKLQNLTKLLLISNDISGPIPPEIGNCSSLIRLRLVDNRISGEIPREIGFLNSLYFLDLSENQLTGSVPLEIGNCKELQMLNLSNNSLSGSLPSYLSSLTRLEVLDVSMNNFSGEVPMGIGQLTSLLRVILSRNSFSGPIPSSIGKCSGLQLLDLSSNNFTGSIPPQLLQIEALDISLNLSHNALSGVIPPEISSLNKLSVLDLSHNNLEGDLMAFSGLENLVSLNISYNKFTGYLPDSKLFHQLSATELAGNQGLCPNGHDSCFVSNAAMTKMLNGTNSKRSEIIKLAIGLLSALIVAMAIFGVVTVFRARKIIQADNDSEMGGDSWPWQFTPFQKVNFSVEQVLKCLIESNVIGKGCSGIVYRAEMENGDVIAVKRLWPTTIAEKCDNRSDKLAVNGGVRDSFSAEVKTLGSIRHKNIVRFLGCCWNRNTRLLMYDYMPNGSLGSLLHERSGNCLEWDIRFRIILGAAQGVAYLHHDCAPPIVHRDIKANNILIGPEFEPYIADFGLAKLVDDRDFARSSSTLAGSYGYIAPEYGYMMKITEKSDVYSYGIVVLEVLTGKQPIDPTIPDGLHIVDWVRQKRGGVEVLDESLRARPESEIEEMLQTLGVALLCVNSSPDDRPTMKDVVAMMKEIRQEREECVKVDMLLHASSANDQQERNLPNEEPMSMISTSSTNLHLHYSPHRPQTPK 1146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00535 1146 MobiDBLite consensus disorder prediction 1109 1146 - -
Spst1g00535 1146 SUPERFAMILY L domain-like 554 713 - -
Spst1g00535 1146 SUPERFAMILY Protein kinase-like (PK-like) 787 1087 IPR011009 -
Spst1g00535 1146 SMART LRR_sd22_2 193 222 - -
Spst1g00535 1146 SMART LRR_sd22_2 362 388 - -
Spst1g00535 1146 SMART LRR_sd22_2 651 676 - -
Spst1g00535 1146 SMART LRR_sd22_2 410 442 - -
Spst1g00535 1146 SMART LRR_sd22_2 169 192 - -
Spst1g00535 1146 Pfam Leucine rich repeat N-terminal domain 55 95 IPR013210 -
Spst1g00535 1146 Gene3D Ribonuclease Inhibitor 423 723 IPR032675 -
Spst1g00535 1146 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 492 1088 - -
Spst1g00535 1146 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g34110 55 211 - -
Spst1g00535 1146 Gene3D Ribonuclease Inhibitor 209 309 IPR032675 -
Spst1g00535 1146 Gene3D Phosphorylase Kinase; domain 1 789 894 - -
Spst1g00535 1146 Gene3D Transferase(Phosphotransferase) domain 1 895 1111 - -
Spst1g00535 1146 ProSitePatterns Protein kinases ATP-binding region signature. 810 832 IPR017441 GO:0005524
Spst1g00535 1146 Gene3D Ribonuclease Inhibitor 314 422 IPR032675 -
Spst1g00535 1146 PRINTS Leucine-rich repeat signature 651 664 - -
Spst1g00535 1146 PRINTS Leucine-rich repeat signature 509 522 - -
Spst1g00535 1146 SUPERFAMILY RNI-like 233 598 - -
Spst1g00535 1146 ProSiteProfiles Leucine-rich repeat profile. 364 387 IPR001611 GO:0005515
Spst1g00535 1146 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 310 418 - -
Spst1g00535 1146 SMART LRR_typ_2 506 530 IPR003591 -
Spst1g00535 1146 SMART LRR_typ_2 362 385 IPR003591 -
Spst1g00535 1146 SMART LRR_typ_2 386 410 IPR003591 -
Spst1g00535 1146 SMART LRR_typ_2 314 338 IPR003591 -
Spst1g00535 1146 SMART LRR_typ_2 554 578 IPR003591 -
Spst1g00535 1146 SMART LRR_typ_2 674 699 IPR003591 -
Spst1g00535 1146 SMART LRR_typ_2 169 193 IPR003591 -
Spst1g00535 1146 SMART LRR_typ_2 434 458 IPR003591 -
Spst1g00535 1146 SMART LRR_typ_2 651 673 IPR003591 -
Spst1g00535 1146 MobiDBLite consensus disorder prediction 1109 1138 - -
Spst1g00535 1146 Pfam Leucine rich repeat 339 399 IPR001611 GO:0005515
Spst1g00535 1146 Pfam Protein tyrosine and serine/threonine kinase 807 1085 IPR001245 GO:0004672|GO:0006468
Spst1g00535 1146 SMART serkin_6 804 1087 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst1g00535 1146 ProSiteProfiles Leucine-rich repeat profile. 653 675 IPR001611 GO:0005515
Spst1g00535 1146 FunFam Predicted protein 212 309 - -
Spst1g00535 1146 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g34110 787 894 - -
Spst1g00535 1146 ProSitePatterns Serine/Threonine protein kinases active-site signature. 939 951 IPR008271 GO:0004672|GO:0006468
Spst1g00535 1146 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 436 723 - -
Spst1g00535 1146 ProSiteProfiles Protein kinase domain profile. 804 1090 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst1g00535 1146 Gene3D Ribonuclease Inhibitor 54 208 IPR032675 -
Spst1g00535 1146 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 895 1105 - -
Spst1g00535 1146 SUPERFAMILY L domain-like 55 327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g00535 Spst-Chr1 6846656 6850366 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g00535 53 1138 Receptor kinase-like Gene Family AT5G56040 47.283 0.0 967
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Spst1g00535 PK_Tyr_Ser-Thr 3.1e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00535 - - gmx:100794698 2007.65