Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00533 ATGCACGTTCAATTTCCTGCACCATTGGAAAAGTATGTTCCCACCATGCTGAACAAGGTTATCGCGGTGGATTCAGTTCTTCAGGACCTTATGGGAGGCATAGCTCAAGACAAAGATTTGTCTTCACGACGAAGATCTGTAGTTGAAAAGTTCATGGCGTTTCTCAAGTCTTTCTCTCTCTACATTTCCATGTCCTTGTTCTTCTTCCTCTTCTTTTGCTTCTGCAAAGCCAGTACTACCACCGCAAAGTTATTGTCCCCTTCACCATCCACTTCCTCTGATGTTGAACTTCTCTTGGGAAAAATCAAAGCTTCACTGCAAGGTAACTCTGACAACCTTGTTTTGTCTTCATGGAACTCCTCTATCCCACTTTGTCAGTGGAGAGGCCTCAAGTGGGTCTTCTCCAATGGCACTTCTCTTTCATGCACTGACTTGTCCTCTCCGCAATGGACCAATCTTACACTCCACAAGGACCCTTCTCTTCACTTGCTTTCTCTTCAGCTCCCATCTGCAAACCTCTCTGGTTCCCTCCCCAGAGAACTTGGGGGGTTCCCGATGCTTCAAAGTTTCTACCTGAACATAAATTCATTACAGGGAACCATCCCTCTTGAGCTTGGCTACAGCTCCTCCCTCTCTGACATTGATTTGGGTGACAATATGCTAAGTGGGGTTCTTCCCCCATCCGTTTGGAACTTGTGTGACAGGCTTGTTTCCCTTAGGCTCCATGGTAATTCACTCTCGGGGTCTGTTTCCGAGCCTGCATTGCCCAACTCATCTTGCAAGAATTTGCAGTTGCTTGATTTAGGTGGCAACAAGTTTTCTGGGAGTTTCCCTGAGTTCATCACAAAGTTTGGTGGGCTAAAGCAGCTTGACTTGGGGAACAACTTGTTCACGGGTACAATTCCTCAGAGTCTAGCTGGGCTGAGGCTTGAAAAATTGAATCTTTCCCACAATAACTTTAGTGGGGTTTTGCCTTTCTTTGGAGAATCGAAGTTTGGTGTGGATGCTTTTGAGGGTAATAGCCCTGGCTTGTGTGGGCCACCTTTGGCAAGCTGTGCTAGGACCTCTACACTAAGTTCTGGTGCAGTTGCTGGTATTGTTATTAGTCTGATGACAGGGGCTGTGGTTTTAGCCTCTTTGCTGATTGGGTATATGCAGAACAAGAAGAGGAAGGGGAGTGGAGAGAGTGAAGATGAGTTGAATGAAGAAGAGGAAGATGAAGAGAATGGTGGTAATGCTATCTGTGGAGCTGGTGAAGGGAAGCTTATGTTGTTCCCTGGAGGTGAGAATTTGACATTGGATGATGTGTTGAATGCAACTGGGCAAGTTTTGGAGAAGACTTGTTATGGGACAGCTTATAAGGCTAAGCTTGCCGATGGAGGCACCATTGCTTTGAGGTTGTTGAGAGAAGGTAGCTGCAGAGATAGGGCTTCATGTTTGTCAGTTATTAAGCAATTGGGAAAAATTCGCCATGAGAATTTGATTCCTTTGAGGGCTTTCTATCAGGGGAAGAGAGGGGAGAAGCTCCTTATCTATGACTATCTGCCTCTTAGAACCCTTCATGATCTTTTACATGAACCTAAAGTTGGAAAGCCAGTTCTGAACTGGGCCAGGCGACACAAGATTGCATTGGGCATAGCAAGAGGTCTAGCTTATCTTCACACCGGACTAGAAGTTCCTGTCACTCATGCAAATGTAAGGTCCAAGAATGTGCTTGTGGATGACTTCTTTGCAGCCAGGCTAACGGATTTTGGCCTGGACAAGCTGATGGTTCCTTCCATAGCAGACGAAATGGTGGCGCAGGCCAAGACAGATGGCTACAAGGCCCCTGAGCTTCAAAGAATGAAGAAATGCAGCTCCAGGACTGATGTCTATGCTTTTGGCATACTCCTGCTTGAAATCTTGATTGGGAAGAAGCCTGGAAAGAATGGAAGAAGTGGTGAGTATGTGGACTTGCCCTCGATGGTGAAGGTGGCGGTTTTGGAGGAGACGACAATGGAAGTGTTTGATGTGGAACTGTTGAAAGGGATAAGAAGTCCTATGGAAGATGGGTTGGTGCAGGCACTGAAGCTGGCAATGGGGTGCTGTGCACCAGTGGCATCCGTGAGGCCAAGCATGGATGAAATTGTGAGGCAGTTGGAGGAGAATAGACCAAGGAACAGGTCTGCATTATACAGCCCTACAGAAACAAGAAGTGGAAGTGTTACACCATTTTGA 2217 0.4655 MHVQFPAPLEKYVPTMLNKVIAVDSVLQDLMGGIAQDKDLSSRRRSVVEKFMAFLKSFSLYISMSLFFFLFFCFCKASTTTAKLLSPSPSTSSDVELLLGKIKASLQGNSDNLVLSSWNSSIPLCQWRGLKWVFSNGTSLSCTDLSSPQWTNLTLHKDPSLHLLSLQLPSANLSGSLPRELGGFPMLQSFYLNINSLQGTIPLELGYSSSLSDIDLGDNMLSGVLPPSVWNLCDRLVSLRLHGNSLSGSVSEPALPNSSCKNLQLLDLGGNKFSGSFPEFITKFGGLKQLDLGNNLFTGTIPQSLAGLRLEKLNLSHNNFSGVLPFFGESKFGVDAFEGNSPGLCGPPLASCARTSTLSSGAVAGIVISLMTGAVVLASLLIGYMQNKKRKGSGESEDELNEEEEDEENGGNAICGAGEGKLMLFPGGENLTLDDVLNATGQVLEKTCYGTAYKAKLADGGTIALRLLREGSCRDRASCLSVIKQLGKIRHENLIPLRAFYQGKRGEKLLIYDYLPLRTLHDLLHEPKVGKPVLNWARRHKIALGIARGLAYLHTGLEVPVTHANVRSKNVLVDDFFAARLTDFGLDKLMVPSIADEMVAQAKTDGYKAPELQRMKKCSSRTDVYAFGILLLEILIGKKPGKNGRSGEYVDLPSMVKVAVLEETTMEVFDVELLKGIRSPMEDGLVQALKLAMGCCAPVASVRPSMDEIVRQLEENRPRNRSALYSPTETRSGSVTPF 738
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00533 738 Gene3D Transferase(Phosphotransferase) domain 1 516 730 - -
Spst1g00533 738 FunFam Leucine-rich repeat receptor-like protein kinase 260 352 - -
Spst1g00533 738 Pfam Leucine rich repeat 262 320 IPR001611 GO:0005515
Spst1g00533 738 SUPERFAMILY L domain-like 127 326 - -
Spst1g00533 738 Gene3D Phosphorylase Kinase; domain 1 427 514 - -
Spst1g00533 738 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 69 717 IPR046959 -
Spst1g00533 738 Gene3D Ribonuclease Inhibitor 258 356 IPR032675 -
Spst1g00533 738 MobiDBLite consensus disorder prediction 719 738 - -
Spst1g00533 738 Gene3D Ribonuclease Inhibitor 93 255 IPR032675 -
Spst1g00533 738 MobiDBLite consensus disorder prediction 390 412 - -
Spst1g00533 738 SUPERFAMILY Protein kinase-like (PK-like) 442 714 IPR011009 -
Spst1g00533 738 Pfam Leucine rich repeat N-terminal domain 99 129 IPR013210 -
Spst1g00533 738 ProSiteProfiles Protein kinase domain profile. 438 738 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst1g00533 738 Pfam Protein tyrosine and serine/threonine kinase 442 713 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g00533 Spst-Chr1 6823201 6836601 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g00533 66 738 Receptor kinase-like Gene Family AT3G24660 73.887 0.0 946
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Spst1g00533 PK_Tyr_Ser-Thr 5.9e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00533 - - gmx:100814814 1197.96