Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00529 ATGTCGGGGCAGAGAAGGTCAAGGGCATCAAAGTTCTCTCAGAATGAGATTAGTGACCTTGTTTCTAGGTTACAAGGACTTCTTCCACAACTCAACCAAAGACCCAACTCAAGGCAATCAGCGTCCAAGATATTGCAAGAAACCTGCTGTCACATTAGGAGATTACAGGAAGAAGTGGAACAACTCAGTGAGAGACTATCAGAACTCATGGATTCTTTGGATATCAATGAAATTGATAGACAAATTTTACAAAACTTGTTTTCCCTCAACACCCCCAAGCAAACCCCAGAAGTGGCACAAGGGAACATACTCATGGTAGGCAAGAAAATGTCAAGTGCTTCAAAGTTTACTATAAGAATGAGATCAACCATCTTCCTTCCAAATTACAAGTTCTGCTTCCACCACTGA 408 0.4142 MSGQRRSRASKFSQNEISDLVSRLQGLLPQLNQRPNSRQSASKILQETCCHIRRLQEEVEQLSERLSELMDSLDINEIDRQILQNLFSLNTPKQTPEVAQGNILMVGKKMSSASKFTIRMRSTIFLPNYKFCFHH 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00529 135 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 15 73 IPR036638 GO:0046983
Spst1g00529 135 Coils Coil 45 79 - -
Spst1g00529 135 Gene3D - 5 86 IPR036638 GO:0046983
Spst1g00529 135 PANTHER DNA BINDING PROTEIN 1 87 IPR044172 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g00529 Spst-Chr1 6803623 6806827 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g00529 9 87 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G39860 46.250 2.35e-17 70.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Spst1g00529 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00529 - - cam:101497180 117.087