Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00527 ATGAAGGCACTGTCTCTCAGACTCTTCATTATCACCGTTCTGCTTGCGGCGCTGCTTTCAGCTGCCGCCAACGCAGTCAGTGAAAATCAGATGAGCAAACGCAAAGCCACAGAATCAAGGGATGTGGTTGAAGAGGAGAAGTTGCGAGTTCAGAGCCTGAAGAATTCGTCAATGGCAGAAAGGTTGGAGGATCCTTTGAATGGACATGCTGTTGATAATCCAGAGGAGATTGCTTCTATGGTTAACGAGAGCATACACAATTCGACGGCTCGAAGGAATCTGAATTTCTTCTCATGTGGGACGGGGAACCCAATCGACGACTGCTGGCGGTGCGACAGGCGATGGTACCTCCGGCGAAAGCGGCTTGCCAACTGTGGCATCGGCTTCGGCCGCAACGCGATTGGAGGGCGCGATGGCCGCTACTACGTGGTGTCGGATCCGAACGACGATGACCCGGTGAACCCGAAACCAGGAACGCTCCGGCACGCCGTGATCCAAGACCGTCCCCTCTGGATTGTCTTTAAGAGGGACATGGTGATTACGCTGAAGCAGGAGCTGATAATGAACAGCTTCAAGACCATCGACGGGCGCGGCGTCAACGTCCACATCGCGTACGGCGCCTGCATTACCATCCAGTTCATCACCAACGTCATCATCCATGGCCTCCATATTCACGACTGCAAGCCCACAGGCAACGCCATGGTTCGCAGCTCCCCCTCCCACTACGGGTGGAGAACAATCGCTGACGGGGATGGCGTCTCCATCTTTGGTTCAAGCCACATTTGGATCGACCATAACTCCCTCTCCAATTGCGCTGACGGACTTATCGACGCCATTATTGGCTCCACTGCCATTACCATCTCCAACAACTACTTCACCCACCACAACGAGGTTATGCTTCTGGGTCACAGTGACTCTTATGTCCGCGACAAGCAGATGCAAGTAACCATTGCTTACAACCATTTTGGGGAGGGACTTATCCAAAGAATGCCCAGGTGCAGACACGGGTATTTCCACGTTGTTAACAATGACTATACCCACTGGGAAATGTATGCAATTGGTGGCAGTGCTAACCCCACAATTAACAGCCAAGGCAACAGATACCTTGCCCCTGTGAACCCTTTTGCTAAAGAGGTGACAAAGAGAGTAGATACTGGTGAATCGGAATGGAAAAGTTGGAATTGGAGGTCTGAGGGAGACCTTTTGCTGAATGGAGCCTTTTTCACTTCTTCAGGAGCAGGAGCTGCAGCAAGCTATGCTAGAGCGTCAAGTTTGGGGGCCAAATCATCTTCTTTGGTTGGTAGCCTTACCTCTGGAGCCGGTGTTCTTGACTGCCGCAGGGGTGCCATGTGTTAA 1356 0.5221 MKALSLRLFIITVLLAALLSAAANAVSENQMSKRKATESRDVVEEEKLRVQSLKNSSMAERLEDPLNGHAVDNPEEIASMVNESIHNSTARRNLNFFSCGTGNPIDDCWRCDRRWYLRRKRLANCGIGFGRNAIGGRDGRYYVVSDPNDDDPVNPKPGTLRHAVIQDRPLWIVFKRDMVITLKQELIMNSFKTIDGRGVNVHIAYGACITIQFITNVIIHGLHIHDCKPTGNAMVRSSPSHYGWRTIADGDGVSIFGSSHIWIDHNSLSNCADGLIDAIIGSTAITISNNYFTHHNEVMLLGHSDSYVRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYLAPVNPFAKEVTKRVDTGESEWKSWNWRSEGDLLLNGAFFTSSGAGAAASYARASSLGAKSSSLVGSLTSGAGVLDCRRGAMC 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00527 451 SUPERFAMILY Pectin lyase-like 80 445 IPR011050 -
Spst1g00527 451 SMART amb_all 177 374 IPR002022 -
Spst1g00527 451 FunFam Pectate lyase 102 444 - -
Spst1g00527 451 Pfam Pectate lyase 186 366 IPR002022 -
Spst1g00527 451 PRINTS Pollen allergen Amb family signature 149 174 IPR018082 -
Spst1g00527 451 PRINTS Pollen allergen Amb family signature 393 417 IPR018082 -
Spst1g00527 451 PRINTS Pollen allergen Amb family signature 125 142 IPR018082 -
Spst1g00527 451 PRINTS Pollen allergen Amb family signature 185 201 IPR018082 -
Spst1g00527 451 PRINTS Pollen allergen Amb family signature 249 270 IPR018082 -
Spst1g00527 451 PRINTS Pollen allergen Amb family signature 329 348 IPR018082 -
Spst1g00527 451 PRINTS Pollen allergen Amb family signature 351 370 IPR018082 -
Spst1g00527 451 PRINTS Pollen allergen Amb family signature 422 445 IPR018082 -
Spst1g00527 451 Gene3D - 102 444 IPR012334 -
Spst1g00527 451 PANTHER PECTATE LYASE 18-RELATED 72 448 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g00527 Spst-Chr1 6792522 6797792 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g00527 39 451 Polysaccharide Lyase AT4G13710 78.147 0.0 685
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00527 K01728 - gmx:100809277 803.512
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g00527 1 6792522 6797792 Spst1g00527 1 6792522 6797792 ECH