Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00526 ATGGTGGTCATAGAGCAGGAAGAGAGTGAACGCCGAAATGCGAGCCCCTCTAACGCCGCTGGTGCTGCCAACGACGCTTCCGACGGATTCGAAACCGCCAGCGAGGCCGATCTCGGCAGTGATGATGATGATGGCGGAGTGGACAGCCAAGAGGAGCATAATCGCCCGGATAAACACCACCACCAGCAGCAGACGGGGCAACAACCTGAACACGATGTTCCTCTTAGCACAACTGAATCCTCCGAGAATGCCTTGGTTACCGAAGAGTCCTCCGAGAATGCTTTGGTCACCGAGGAGTCCCCCGAGAATGCCTTGGTCACCGAGGAATCCTCCGAGAATCCCTTGATCAACGAAGAAGAATCGAGACAGAAAGCGTTGGATCAAGCAAATGAAGCAAAGTTAGAAGGGAACAAGCTTTTTGTAGATGGGAAGTATGAGGAGGCGTTATCGCAGTATGAAGTTGCTTTACAAGTAGCACCAGACACACCTTCATCTGTGGAAATACGGTCAATATGCCATTCGAACCGTGGTGTGTGCTTTCTGAAACTGGGAAAATATGATAACACAATTAAGGAATGCACGAAAGCATTAGAACTGAATCCTGTGTACGTTAAGGCTTTTGTAAGAAGAGGAGAAGCTCATGAAAAGCTCGAGCATTTTGAAGAGGCCATTGCTGATATGAAAAAGATCTTAGAAATTGATCCCTCAAATGATCAAGCTAGGAAAACAATTAGGCGCCTAGAGCCCCTTGCTGCAGAAAAACGGGAAAAGATGAAGGAAGAAATGATTGCAAAACTGAAAGATATGGGCAATTCTGTCCTGGGTCGCTTTGGGATGAGTGTAGACAACTTTAAAGCAGTCAAGGATCCAAACACTGGGGTGCTCTTGTTTGAGGTGTTGGATGTTGTAAAATTGAAGAAGTGCCTTCACTCGTGTTTGGTAGAATTGCAACATGAATGCGACATGTGA 969 0.4696 MVVIEQEESERRNASPSNAAGAANDASDGFETASEADLGSDDDDGGVDSQEEHNRPDKHHHQQQTGQQPEHDVPLSTTESSENALVTEESSENALVTEESPENALVTEESSENPLINEEESRQKALDQANEAKLEGNKLFVDGKYEEALSQYEVALQVAPDTPSSVEIRSICHSNRGVCFLKLGKYDNTIKECTKALELNPVYVKAFVRRGEAHEKLEHFEEAIADMKKILEIDPSNDQARKTIRRLEPLAAEKREKMKEEMIAKLKDMGNSVLGRFGMSVDNFKAVKDPNTGVLLFEVLDVVKLKKCLHSCLVELQHECDM 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00526 322 MobiDBLite consensus disorder prediction 48 66 - -
Spst1g00526 322 MobiDBLite consensus disorder prediction 1 128 - -
Spst1g00526 322 Pfam Tetratricopeptide repeat 172 201 IPR001440 GO:0005515
Spst1g00526 322 ProSiteProfiles TPR repeat profile. 170 203 IPR019734 GO:0005515
Spst1g00526 322 Gene3D Tetratricopeptide repeat domain 88 267 IPR011990 GO:0005515
Spst1g00526 322 ProSiteProfiles TPR repeat profile. 204 237 IPR019734 GO:0005515
Spst1g00526 322 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 1 1 293 - -
Spst1g00526 322 Pfam Tetratricopeptide repeat 205 237 IPR013105 -
Spst1g00526 322 Coils Coil 115 135 - -
Spst1g00526 322 SUPERFAMILY TPR-like 125 247 IPR011990 GO:0005515
Spst1g00526 322 SMART tpr_5 170 203 IPR019734 GO:0005515
Spst1g00526 322 SMART tpr_5 129 162 IPR019734 GO:0005515
Spst1g00526 322 SMART tpr_5 204 237 IPR019734 GO:0005515
Spst1g00526 322 MobiDBLite consensus disorder prediction 67 112 - -
Spst1g00526 322 ProSiteProfiles TPR repeat profile. 129 162 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g00526 Spst-Chr1 6767171 6771398 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g00526 77 271 Calmodulin-binding Proteins AT3G25230 34.783 4.41e-17 80.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00526 K24926 - gmx:100808386 380.948