Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00525 ATGGATGAGGTGATGAAGGGAGCCAATTTTGGAGAAAGCCAAAGAGAAGATGCATCAAGAGTTTTTCCATGTCTATTTTGTTCAAGAAAATTTTACAGTTCTCAAGCTTTGGGAGGACACCAAAATGCTCACAAGAAAGAAAGAACAGCTGCAAGGAAGGTCAAGAGGGCTTCGGAGTACTCGAGTGTTTCCTTCCCTTCCCCACTGCCAGCCCCTATGCTTTTTGCTCCAACTCACTTAGATATTTTAAATCCTTCAATGTTCATCACTGCCCATGCAGCAGAACTCCCTTATATGCAAAGCCATCAAATTTCGGAACAATTTGGATCAAATGGTGCACCAAGATTTGGCAATGCACTGCTCTATGGGGTAAGTAACCGGTTACATGAAGATGGGAAGAGCACTAGCGTCAGCTGGGGGGACACATCTCAACACAAGTCATTGATAAGTAACGATCAACACCTTGGAATTTGGAATAATGGGACAGAGAAAGATCAAAAGCTTGATTTGTCTCTCCATTTGTAG 525 0.4286 MDEVMKGANFGESQREDASRVFPCLFCSRKFYSSQALGGHQNAHKKERTAARKVKRASEYSSVSFPSPLPAPMLFAPTHLDILNPSMFITAHAAELPYMQSHQISEQFGSNGAPRFGNALLYGVSNRLHEDGKSTSVSWGDTSQHKSLISNDQHLGIWNNGTEKDQKLDLSLHL 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00525 174 ProSitePatterns Zinc finger C2H2 type domain signature. 24 44 IPR013087 -
Spst1g00525 174 SUPERFAMILY beta-beta-alpha zinc fingers 20 49 IPR036236 -
Spst1g00525 174 ProSiteProfiles Zinc finger C2H2 type domain profile. 22 49 IPR013087 -
Spst1g00525 174 PANTHER ZINC FINGER PROTEIN JAGGED 16 174 IPR045320 GO:0003700
Spst1g00525 174 Gene3D Classic Zinc Finger 4 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g00525 Spst-Chr1 6765341 6765865 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g00525 20 174 C2H2 Transcription Factor Family AT5G48890 42.500 1.51e-16 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00525 - - gmx:100527084 295.819