Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00523 ATGGACGCAGAAATTGAACCTTCATGTGATAGTTGGTTTTATGGCACTCAACTTGGTCTGAAATACTCATCAGTTTGTCGTAGACTCTTGCGCCCTTCTAAAGTATTAAAGATTGAAGATGTGATCCTCCTCTCTTTGGTTCTTGGGTCGAGAGTAGATGAGAAAATTGCACTAAATAAGACAAAAATCCTGTTAGGTAGCAACACTGGTAAAGATCCTAGGGTGTTTCCTGAACACGCCCAACAAGAACTATCAGGTGGTGTTTCAAGTACAGGACGTCTTGTACAAAATATCACTATGCAGACAGGAGAGGAATTTTCTGTGACTGCTGGAAGGGTTCTTGTTTCACCCGACATACCTCGAAATCGTGAGAATGTGTTTGGATTGAATAGGGAGAATGACAATGTGAGATATGAAGATCTTACTAATATTTTGGGGTTGACGAGAATGAACTCTGAGAATTCTTCTGACATATCTGACTTTGCATCTATAAAACAGTCAGTTCAGGAGAAGGAAAATGGTGCTTCTGTAAACATTTTTAACAAAATTCAAAAGGGAGATGGTATGTTGAGGAAGGCTGTTGAAGAACCAGTCGGTGACCAGTCTGGTATCCCAGTTGTATCACCCTTTCACAGATATAAAGCTTCTCAGTCCAATGGATTTTCTGGTTCAGGGGTTTTTGATGATTTTCTGTATGGGAAAATGAAGTTTCTGTGCAGTTTTGGTGGAAAAATATTACCAAGACCCAGTGATGGGAAACTCAGATATGTAGGGGGAGAGACCCACATCATATCTATCCTAAAGGATATTTCATGGGAAGAGCTTATGAAGAAGACCTTGGGTATTTGCAATCAACCTCACACTATCAAGTACCAGCTTCCAGGGGAGGATCTTGATGCTCTAATTTCTGTTTCCTCTGACGAAGATCTTCAAAATATGAAAGAGGAATACCATGGGCTTGAAAGGCATGAACGTTCACAAAAACTTCGAATTTTTTTAGTCCCTTTGGGTGAATCTGAAGAGACATCATCAACAGAGGTGAGTGCTGTTCAGCAGGGTGATCCTGATTACCAATATGTTGTCGCCGTAAATGGCATGGGAGACCCTGCTAGGACAAACATTGGTGGGCAGAATTTGACAAATGAATCTAGTCAGTTGGGGACAGATTTGAATTTTGCTCCAGCTCTCTTGAAAAATCCAAATGCTTCTCCTTTGGAGATTAGGAATGCTATTAATGCTTTAAATTCAGATGGAATTTTGAATGATTCCCTGAATTTGCAGAGGCCCTTGCCAATTCCTCTCACTTCAATTCCAGTAACAGGTTCTAGCACAGGTTATATACAATTACTCGGTGACCACTCATGTCAGGGAAGCATTGACAGTAATGCATCCTTTGCTACTGCTCAGCTACATCCTGAGTACTCCAATATAAGCACTTGTAATTGCAGAAACCCTCAGCATGTGGCTGCTACTTTGCTAAGTGACACCTTTCCTTATCAGTATGGTGATGTTGGTCAGCCCGATAAGCTCAATGGAGGTCATTTGGACTACAATCCTGGCAAGGAATTAGTGACTCCTGTACATGTTAATCCCAGAGATGAAGCTTTTGGTAGAAAGTCCTTGCAAAGGGAAGGAAGGATCTACTCTGAAAGACCTGTTTCACACTTGGATGATCCAATCTGTCAACAGGGTGAATCTTATGGAATTACAGATTCCCCTCATGGGATGCCTCATGCCTTTTCTGATCCACAGTTGCAAGAGAGTGGAGCAAGGTCTGGGCACTGCTCCCAAAATGGATATGGTCAATCTTTCTCCTTGAATCTTGGAAAGGGTCAATTATCTTCAACGTTAATCACTAGTGTCTCACAAGTGAACGTTATGGAGCATCTGTACGATTCCATTGTCCATCATCCTCAAATTCAAAGTACAGCACCAAAAATTGAGTCAGTTGAGACACACAAAAGGCAAGATTTGGCATCTTCTCAATACTATGAGTCAATGGGAATGAATGATCTTGTTCACATGGATAACATTTCAACTGAAAAAAAGAAATTTATTGCTCAAACTGAGTTGAGTATACCCAGCTATGTTGCAAAGGATGTTCAGGAAAATTCTGTGAAATTAAAAAGGATGAACATAATTGAACAGAAGAATTCTATTCCAAAGGATAGCAAGGTTCATGAGGGGAAATCAACTGTCTTTGATAAGGGATTTGTAACTGAATTGCATCTTTTTGACTCCGTTCCTACTAATAACTTAAATGATAATAATAATATGCAAAAGAATAGGGAGCTACCTTCTGAGGGTATTGTTCCTAGTCCATCAGGCACGATGGGCTTCTCCTTAAATAATCTAGTCGGAAAGGCCCTGTTTGATTCTGACATGAGCCTAAGGACTAGTGATCACAAAAAATATGCATTGGCTGAAGGTCTGAATGGTGAACAACGGTTTGATTTTTCATTGACCAGAAATTTTGATTTAAATGCTCCAATTTTGAATTCTGAAGTAGGCTCTTGTGACAAAAGTTCTCGAGGAGATCACATGTTCAAGCGGTCCATTCACCCAGTTTCTCTTAAACCTGCACAAAGTCATCCTTCAAAACATCATATGGTTCTAGGTTTTCAAGAAAATCCTGTAGTAAGCTCTGCAAGTTTGTATCCTGCTGCATTTTGTGATGATCTTGATCCAAATCTAAACATGTCTATAAATGGCCTTGATAGTTCAATTAATATTTTGTCGTTTAAAAAGGCACCATCTCTGCTTGATGACTTAATTACCAACAATGGTCAAATGGTGGATCAATTTATCCCTAAACACTTTGCCCCAGGAATGTCAATAGTTGAAGATAAAATTTCAGAACAATCAAAAGTTTTAGAAGGTTGTACTGATGTGAATCAAGGGGAGTCGTTCATAGTAGCAGACATGACTGGTGTTGTTCATCCATATATTTCTGGTGATGTTGTAAATGGTGTCATATCCCCATCTCATATGGAAGAGAGCATCATCCCTGAGTTTGAACCCGAGGATTTCAATGAAGACAAAAATAAATTCCTTTCTGATGCAATGATAGCAGAAATGGAAGCTAGCATTTATGACTTTGCTAATTCAATAATAAGGAATGCTGATCTTGAAGAACTTACGGAGTTAGGATCTGGTACTTATGGAACTGTTTATCATGGAAAATGGCGGGGAACAGATGTTGCTATAAAGAGAATTAAAAGGAGCTGCTTTGCAGGGAGGTCTTCCGAGCAAGAACGGTTGGCAAAAGATTTCTGGAGAGAGGCACAAATCCTCTCAAATCTTCACCATCCCAATGTGGTTGCATTTTATGGAATAGTACCGGATGGGTCTGGAGGAACCTTAGCAACTGTAACAGAATACATGGTTAATGGTTCCCTTAGGCATGTCCTTGTAAAGAACAACAGATTACTTGATCGCCGTAGAAAACTAATAATTGCCATGGATGCAGCTTTTGGTATGGAATATTTGCACTCAAAAAATATCGTCCATTTTGATTTGAAATGTGACAATTTGCTTGTCAATCTAAGGGATTCACAACGACCAATATGCAAGGTTGGAGATTTTGGACTATCAAGAATTAAACGCAATACCCTTGTATCTGGAGGTGTGCGAGGAACCCTTCCATGGATGGCACCAGAGCTTTTGAATGGGAATAGCAGTCGGGTTTCTGAAAAGGTTGACGTTTTCTCATTTGGCATCTCAATGTGGGAGTTATTAACAGGAGAGGAACCTTATGCAGATATGCATTGTGGTGCGATTATTGGGGGCATTGTAAAGAACACTCTTAGACCTCCTGTGCCTGAAGGATGCGATTCTGAATGGAGGAAGCTTATGGAAGAGTGTTGGTCACCTGACCCCGAAAGGCGACCATCATTTACAGAGATCACTAGCAGGTTAAGATCCATGTCTCTAGTCCTTCAAGCAAAAGGGAATTATCAGGCACATCAGTTAAGACCCTCCTGA 3984 0.4024 MDAEIEPSCDSWFYGTQLGLKYSSVCRRLLRPSKVLKIEDVILLSLVLGSRVDEKIALNKTKILLGSNTGKDPRVFPEHAQQELSGGVSSTGRLVQNITMQTGEEFSVTAGRVLVSPDIPRNRENVFGLNRENDNVRYEDLTNILGLTRMNSENSSDISDFASIKQSVQEKENGASVNIFNKIQKGDGMLRKAVEEPVGDQSGIPVVSPFHRYKASQSNGFSGSGVFDDFLYGKMKFLCSFGGKILPRPSDGKLRYVGGETHIISILKDISWEELMKKTLGICNQPHTIKYQLPGEDLDALISVSSDEDLQNMKEEYHGLERHERSQKLRIFLVPLGESEETSSTEVSAVQQGDPDYQYVVAVNGMGDPARTNIGGQNLTNESSQLGTDLNFAPALLKNPNASPLEIRNAINALNSDGILNDSLNLQRPLPIPLTSIPVTGSSTGYIQLLGDHSCQGSIDSNASFATAQLHPEYSNISTCNCRNPQHVAATLLSDTFPYQYGDVGQPDKLNGGHLDYNPGKELVTPVHVNPRDEAFGRKSLQREGRIYSERPVSHLDDPICQQGESYGITDSPHGMPHAFSDPQLQESGARSGHCSQNGYGQSFSLNLGKGQLSSTLITSVSQVNVMEHLYDSIVHHPQIQSTAPKIESVETHKRQDLASSQYYESMGMNDLVHMDNISTEKKKFIAQTELSIPSYVAKDVQENSVKLKRMNIIEQKNSIPKDSKVHEGKSTVFDKGFVTELHLFDSVPTNNLNDNNNMQKNRELPSEGIVPSPSGTMGFSLNNLVGKALFDSDMSLRTSDHKKYALAEGLNGEQRFDFSLTRNFDLNAPILNSEVGSCDKSSRGDHMFKRSIHPVSLKPAQSHPSKHHMVLGFQENPVVSSASLYPAAFCDDLDPNLNMSINGLDSSINILSFKKAPSLLDDLITNNGQMVDQFIPKHFAPGMSIVEDKISEQSKVLEGCTDVNQGESFIVADMTGVVHPYISGDVVNGVISPSHMEESIIPEFEPEDFNEDKNKFLSDAMIAEMEASIYDFANSIIRNADLEELTELGSGTYGTVYHGKWRGTDVAIKRIKRSCFAGRSSEQERLAKDFWREAQILSNLHHPNVVAFYGIVPDGSGGTLATVTEYMVNGSLRHVLVKNNRLLDRRRKLIIAMDAAFGMEYLHSKNIVHFDLKCDNLLVNLRDSQRPICKVGDFGLSRIKRNTLVSGGVRGTLPWMAPELLNGNSSRVSEKVDVFSFGISMWELLTGEEPYADMHCGAIIGGIVKNTLRPPVPEGCDSEWRKLMEECWSPDPERRPSFTEITSRLRSMSLVLQAKGNYQAHQLRPS 1327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00523 1327 Gene3D - 253 335 - -
Spst1g00523 1327 Gene3D Phosphorylase Kinase; domain 1 1037 1130 - -
Spst1g00523 1327 CDD STKc_MAP3K-like 1049 1306 - -
Spst1g00523 1327 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 1036 1130 - -
Spst1g00523 1327 Pfam Protein tyrosine and serine/threonine kinase 1046 1306 IPR001245 GO:0004672|GO:0006468
Spst1g00523 1327 SUPERFAMILY CAD & PB1 domains 250 340 - -
Spst1g00523 1327 ProSiteProfiles Protein kinase domain profile. 1043 1312 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst1g00523 1327 PRINTS Tyrosine kinase catalytic domain signature 1277 1299 IPR001245 GO:0004672|GO:0006468
Spst1g00523 1327 PRINTS Tyrosine kinase catalytic domain signature 1125 1138 IPR001245 GO:0004672|GO:0006468
Spst1g00523 1327 PRINTS Tyrosine kinase catalytic domain signature 1233 1255 IPR001245 GO:0004672|GO:0006468
Spst1g00523 1327 PRINTS Tyrosine kinase catalytic domain signature 1162 1180 IPR001245 GO:0004672|GO:0006468
Spst1g00523 1327 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 1131 1322 - -
Spst1g00523 1327 SMART PB1_new 249 336 IPR000270 GO:0005515
Spst1g00523 1327 SMART serkin_6 1043 1312 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst1g00523 1327 CDD PB1_UP2 238 333 - -
Spst1g00523 1327 Gene3D Transferase(Phosphotransferase) domain 1 1131 1325 - -
Spst1g00523 1327 PANTHER SERINE-THREONINE PROTEIN KINASE 279 1308 - -
Spst1g00523 1327 SUPERFAMILY Protein kinase-like (PK-like) 1025 1305 IPR011009 -
Spst1g00523 1327 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 254 336 - -
Spst1g00523 1327 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1168 1180 IPR008271 GO:0004672|GO:0006468
Spst1g00523 1327 ProSitePatterns Protein kinases ATP-binding region signature. 1049 1070 IPR017441 GO:0005524
Spst1g00523 1327 Pfam PB1 domain 251 335 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g00523 Spst-Chr1 6745252 6756693 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g00523 231 373 MAP Kinase Kinase Kinase AT1G16270 59.310 7.91e-41 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-6 Spst1g00523 PK_Tyr_Ser-Thr 8.2e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00523 - - pvu:PHAVU_008G122700g 2034.61