LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Spst1g00510	ATGCAACAGTCTGCTACTCGTTCTACCAAAGAATCAGCCCGATCGACTCAGTCACGACCAGGGGATGCCTGGTGCACCGTTTTGTTTTGGACAGAGAATCATAATAACAAGGCAAAGGCAAACCCACAAACAGAACCTAAAATAAACAAGGAGGCCAACAAAGATAATGGGAACAACAACATTGCTGCCCAAACTTTCACTTTCAGGGAATTGGCTACTATCACAAAGAACTTCAGGCAGGAATGCCTAATAGGAGAAGGTGGTTTTGGGAGGGTTTACAAAGGAAAATTTGAAAAAACCAACCAGGAAGTAGCTGTGAAGCAACTTGACAGGAATGGATTACAAGGGAATAGAGAGTTTCTTGTTGAAGTTTTAATGTTGAGTCTTTTGCACCATACAAATCTGGTCAATCTCATTGGATATTGTGCTGATGGAGATCAACGATTATTGGTCTATGAGTACATGCCATTGGGATGCCTTGAGGACCATCTTCTTGATCTTCCTCCAGGAAAGAGGCCTCTAGAATGGTTCAACAGAATGAAAATAGCTTTGGATGCTGCAAAAGGTCTAGAATATTTGCATGACAAGGCCAATCCTCAAGTCATCTACCGTGACTTGAAATCATCTAACATCTTATTAGACAAAGAATTCAATGCAAAACTCTCTGATTTTGGACTAGCAAAGTTGGGTCCTACAGGGGACAAGTCTCATGTATCTTCAAGAGTCATGGGTACTTATGGATATTGTGCCCCTGAGTATCAAAGAACTGGTCAACTAACTGTAAAATCAGATGTATACAGCTTTGGAGTTGTTTTGCTTGAATTGATCACTGGAAGGAGAGCCATTGAGAACACAAGATCATCACGGGAGCAAAATCTAGTTTCTTGGGCAAATCCAATATTCAAGAACTCTAACAGATACTCAGAATTAGCAGACCCTCTTCTTGAAGGAAAATTTCCAATGAGATCCTTGCATCAAGCAGTGGCAGTAGCAGCCATGTGTTTGAATGAGGAGCCATTAGAGAGACCCTTGATCAGAGATGTTGTGACTGCTCTTAGTCTCCTTGGGACAGTCCCAGAGAATCAAGAAGTCTCAGGAACGTCACCTGTTCACATGCCCTCCCCATCACAAGACCAAGAAGCCAACAATGCCCCTAATCTTCTTGATCAGGATATCAGGGCCATTGAACGCCAAAGGGCAGTTGCTGAAGCCATCGAATGGGGCACAAATTCTAGGAACAAAGCACCACAGCGAGGAACTACTCCCTCTTTGTAA	1275	0.4282	MQQSATRSTKESARSTQSRPGDAWCTVLFWTENHNNKAKANPQTEPKINKEANKDNGNNNIAAQTFTFRELATITKNFRQECLIGEGGFGRVYKGKFEKTNQEVAVKQLDRNGLQGNREFLVEVLMLSLLHHTNLVNLIGYCADGDQRLLVYEYMPLGCLEDHLLDLPPGKRPLEWFNRMKIALDAAKGLEYLHDKANPQVIYRDLKSSNILLDKEFNAKLSDFGLAKLGPTGDKSHVSSRVMGTYGYCAPEYQRTGQLTVKSDVYSFGVVLLELITGRRAIENTRSSREQNLVSWANPIFKNSNRYSELADPLLEGKFPMRSLHQAVAVAAMCLNEEPLERPLIRDVVTALSLLGTVPENQEVSGTSPVHMPSPSQDQEANNAPNLLDQDIRAIERQRAVAEAIEWGTNSRNKAPQRGTTPSL	424

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Spst1g00510	424	MobiDBLite	consensus disorder prediction	1	20	-	-
	Spst1g00510	424	SUPERFAMILY	Protein kinase-like (PK-like)	62	365	IPR011009	-
	Spst1g00510	424	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	201	213	IPR008271	GO:0004672\|GO:0006468
	Spst1g00510	424	SMART	serkin_6	78	355	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Spst1g00510	424	ProSitePatterns	Protein kinases ATP-binding region signature.	84	107	IPR017441	GO:0005524
	Spst1g00510	424	FunFam	Serine/threonine-protein kinase PBS1	155	369	-	-
	Spst1g00510	424	MobiDBLite	consensus disorder prediction	36	56	-	-
	Spst1g00510	424	Gene3D	Phosphorylase Kinase; domain 1	48	154	-	-
	Spst1g00510	424	PANTHER	OS07G0668900 PROTEIN	18	362	-	-
	Spst1g00510	424	MobiDBLite	consensus disorder prediction	360	392	-	-
	Spst1g00510	424	MobiDBLite	consensus disorder prediction	404	424	-	-
	Spst1g00510	424	Pfam	Protein kinase domain	80	349	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Spst1g00510	424	ProSiteProfiles	Protein kinase domain profile.	78	355	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Spst1g00510	424	CDD	STKc_IRAK	84	355	-	-
	Spst1g00510	424	Gene3D	Transferase(Phosphotransferase) domain 1	155	368	-	-
	Spst1g00510	424	MobiDBLite	consensus disorder prediction	360	386	-	-
	Spst1g00510	424	FunFam	Serine/threonine-protein kinase PBS1	50	154	-	-
	Spst1g00510	424	MobiDBLite	consensus disorder prediction	410	424	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Spst1g00510	Spst-Chr1	6580799	6582847	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Spst1g00510	31	412	Glycoside Hydrolase	AT3G07070	70.052	0.0	531

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-VIIa-1	Spst1g00510		Pkinase	3.1e-47	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Spst1g00510	-		-	gmx:100786405	650.973