Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00501 ATGGAGAACAACGCATTCAGAGATCGAGTCTTTGCGGACAATGAACACGAAGAAATCCCCGATTCCTTCGTTTGCTGCGTTTGTCTGGATCTATTATACAAGCCCATTGTGCTATCATGTGGCCACATATGCTGTTTCTGGTGTGTCTATTATTCAATGAATTGTCTGCGCGAGTCTCAATGTCCAGTTTGTAGGCATCAATACTATCACTTCCCAACAGTCTGCCAATTGCTTCACTTTTTGCTTCTTAAGATCTATACTGTTGCTTACAAGAGAAGGGAAAGCCAAATTCTTGTGGAAGAAAAAAAATCAGGATTCTACTCTCCTCAATTTGATCCTGATACATGTGAATCACAAGCTAAATTTGGTCATTCTGGTATCCCTTCTTCCTCCTCCGCTATGAAGTTGACATCCAACTCATGCAATGTGGAAACTTCTGAATGTATGGAGCAATTAGGGTCCACTACCCATGAAGGAGATGAAGGAACCATCCATTCTGATCGAAAACCTAATATTATTGCAACTCCTCAGGAAGAGATTTCTCTCCAACAGAAACTATCAGTTGCAGATGTGACTTGTACAATGTGCAAGCAACTGCTCTTTCATCCTGTAGTTCTTAATTGTGGTCATGTATGCTGTCAAACTTGTGTCATCAACATAGATGATGACATGCTCAGATGCCAAGTTTGTCAAAGTCCACATCCCAGAGGATTTCCAAAAGTATGCTTGGAGTTGGATCACTTTTTAGAGGAAAAATTTCCTGAAGAATATAGACAGCGGAGAGATGCCATTGAAATACAGCAAATCAAAGTCAAACTTGAAACCCCTTCCTCCTGTTCATTGGATAATGGTAACAAAGGAGAAAATAGAGATTGGTGGTTAGATCCCGACTCAAAAGTTCACATTGGAGTTGGTTGTGATTTTTGCGGGATGTTTCCAATAATTGGAGATAGATATAAGTGCACTGATTGTAAGGAGAAAATGGGTTTTGATCTTTGCGGTGATTGCTATGCAACTCGCTCCAAGCTTCCTGGCCGATTTAATCAACAACACACCTCAGAGCATAAGTTCAAGCTTGTACAATCCGACCTTGTTCATAACTTTATGTTGGCCACAGGGGACACTTCTATTGACCTGGTGTCTGTAGGAAACTTAGAGATTACCTCGGACGGTGCCGCATTGTTTGATGGTGGAGAAGATAACGACCACAGTGATTCTGAAGCCACCAATTGA 1233 0.4128 MENNAFRDRVFADNEHEEIPDSFVCCVCLDLLYKPIVLSCGHICCFWCVYYSMNCLRESQCPVCRHQYYHFPTVCQLLHFLLLKIYTVAYKRRESQILVEEKKSGFYSPQFDPDTCESQAKFGHSGIPSSSSAMKLTSNSCNVETSECMEQLGSTTHEGDEGTIHSDRKPNIIATPQEEISLQQKLSVADVTCTMCKQLLFHPVVLNCGHVCCQTCVINIDDDMLRCQVCQSPHPRGFPKVCLELDHFLEEKFPEEYRQRRDAIEIQQIKVKLETPSSCSLDNGNKGENRDWWLDPDSKVHIGVGCDFCGMFPIIGDRYKCTDCKEKMGFDLCGDCYATRSKLPGRFNQQHTSEHKFKLVQSDLVHNFMLATGDTSIDLVSVGNLEITSDGAALFDGGEDNDHSDSEATN 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00501 410 SMART ring_2 25 64 IPR001841 -
Spst1g00501 410 SMART ring_2 193 230 IPR001841 -
Spst1g00501 410 SUPERFAMILY RING/U-box 188 234 - -
Spst1g00501 410 ProSiteProfiles Zinc finger RING-type profile. 25 65 IPR001841 -
Spst1g00501 410 ProSiteProfiles Zinc finger ZZ-type profile. 301 365 IPR000433 GO:0008270
Spst1g00501 410 SUPERFAMILY RING/U-box 294 360 - -
Spst1g00501 410 Pfam Zinc finger, ZZ type 302 341 IPR000433 GO:0008270
Spst1g00501 410 ProSiteProfiles Zinc finger RING-type profile. 193 231 IPR001841 -
Spst1g00501 410 SUPERFAMILY RING/U-box 17 74 - -
Spst1g00501 410 Gene3D - 295 361 IPR043145 -
Spst1g00501 410 FunFam E3 ubiquitin-protein ligase PRT1 180 275 - -
Spst1g00501 410 FunFam E3 ubiquitin-protein ligase PRT1 16 111 - -
Spst1g00501 410 SMART zz_5 300 349 IPR000433 GO:0008270
Spst1g00501 410 FunFam E3 ubiquitin-protein ligase PRT1 295 360 - -
Spst1g00501 410 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 152 IPR013083 -
Spst1g00501 410 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 179 278 IPR013083 -
Spst1g00501 410 PANTHER UNCHARACTERIZED 16 370 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g00501 Spst-Chr1 6510558 6517124 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g00501 23 96 C3H Transcription Factor Family AT2G42030 33.784 3.14e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00501 - - gmx:100782681 741.11