Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00484 ATGGCTTCAGAGGAAAAGTGCACAGAAACAAACCAAGTTGATTGTTATGAGGAAAAGTCACAGTCAAGGTGGAATGAAGTAGTAAAAGATGTTGTTACTGCCATAGACACCATCACCTCATCTCAGTTCATAAAGGACAATGAAACTATAACCTCCAGTGGTGGCAACTTCACCTTGGGGTTCTTCACCCCTCAAAATTCTACAAACCGTTATGTGGGAATTTGGTGGCAGCCCAAATTCACGGTCATATGGGTAGCTAACAGAAACCAACCATTGAATGATTCTTCTGGAGTTGTTACCATAGCCAAAGATGGCAATCTTGTGGTGTTGAATGGTCAGAATCACGAGATTTGGTCATCACATGTGTCCACTGTTGGATCCAACTGTACTTCCAAACTCTTAGATTCTGGGAATCTTGTGCTTCGGGAAAGCACATCAGGAAGAACCATATGGGAGAGTTTCCAGCATCCTTCAAATGTATTGTTACCCGATATGAAGATTACAACTAACAAAGTAACAGGTGAGAAAGTAAAACTAACATCATGGAAAAGCCCTTCTGATCCATCCACTGGTAGCTTTTCTGTAAGTGTTGAACGCCTCAGTATACCTGAATTGTTCATCTGGAATGAAACTCGCCCATTCTGGCGCACTGGTCCGTGGAACGGTAAGACCTTTACGGGGGTGCCCAACATGAAATCGTATTATCTTAGAGGGATACATGTTGGAGATGACGGGGAAGGAAATATTGAATTCCATTTCACGGAAGTAGAAGAGATTGACTTCACAATCAATGTTCTGAATTCAACAGGCAATTATGAAGAGAGATTATGGAATGGAGAGAAGAAAGAATGGGTAGTCACATGGAATAGTAGTCAATTTGAGTGTGATGTTTATGGTGTATGTGGACCTTTTGCAATTTGTAATTCTCAAAGCTCACCAACATGCAGATGTTTGAAAGGGTTCGAGCCGAGGAACAACGAGGAATGGAATAGAAATAACTGGACTAGTGGATGCGTTAGGAGAACACCTCTGCAGTGTGGAAGAGCCAGCAACCAAAACGAAAGTACAGATTATACAGAAGATGGTTTTTTGGAACTGAAGATGGTCAAAGTTCCAGATTTTGCAGATGGGTCATCCATCAGACTTCAACCAGACGTGCAGAAGCCGATGTTTGGAGAATTATTTATGTATGTTGTTTCTCCTCTTCCTAATTTGTGCCACTGTAATAAATTAGTAGAGATCATCAAAAGATTCCTTCAATCTAATGGAGATGGAGCATCTGCAGATTATACAAATGACAATGTATTTGGTGATCTATCGCAAGTCAAACTCCAGGAGCTTTTAATATTTAGTTTTGAAAAGCTTGTAACTGCCACAAACAACTTTCACCTATCGAACATACTTGGAAAGGGCGGTTTTGGTCCAGTATACAAGGGACAATTGGACGATGGTAGGGAAATTGCAGTTAAAAGGCTTTCCAGGGCATCTGGACAAGGTCTAGAAGAATTCATGAATGAAGTAGTCGTGATTTCCAAGCTTCAACACCGCAATCTTGTAAGACTTCTTGGTTGCTGTATTGAAAAGGAGGAAAAGATGTTGATTTATGAGTACATGCCAAACAAAAGTTTGGATAAATATATCTTTGGTTAG 1650 0.4055 MASEEKCTETNQVDCYEEKSQSRWNEVVKDVVTAIDTITSSQFIKDNETITSSGGNFTLGFFTPQNSTNRYVGIWWQPKFTVIWVANRNQPLNDSSGVVTIAKDGNLVVLNGQNHEIWSSHVSTVGSNCTSKLLDSGNLVLRESTSGRTIWESFQHPSNVLLPDMKITTNKVTGEKVKLTSWKSPSDPSTGSFSVSVERLSIPELFIWNETRPFWRTGPWNGKTFTGVPNMKSYYLRGIHVGDDGEGNIEFHFTEVEEIDFTINVLNSTGNYEERLWNGEKKEWVVTWNSSQFECDVYGVCGPFAICNSQSSPTCRCLKGFEPRNNEEWNRNNWTSGCVRRTPLQCGRASNQNESTDYTEDGFLELKMVKVPDFADGSSIRLQPDVQKPMFGELFMYVVSPLPNLCHCNKLVEIIKRFLQSNGDGASADYTNDNVFGDLSQVKLQELLIFSFEKLVTATNNFHLSNILGKGGFGPVYKGQLDDGREIAVKRLSRASGQGLEEFMNEVVVISKLQHRNLVRLLGCCIEKEEKMLIYEYMPNKSLDKYIFG 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00484 549 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 35 376 - -
Spst1g00484 549 FunFam receptor-like serine/threonine-protein kinase SD1-8 436 537 - -
Spst1g00484 549 Gene3D - 30 155 IPR036426 -
Spst1g00484 549 ProSiteProfiles Protein kinase domain profile. 462 549 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst1g00484 549 ProSiteProfiles EGF-like domain profile. 291 327 IPR000742 -
Spst1g00484 549 Gene3D Phosphorylase Kinase; domain 1 437 537 - -
Spst1g00484 549 Pfam D-mannose binding lectin 81 183 IPR001480 -
Spst1g00484 549 SUPERFAMILY Protein kinase-like (PK-like) 441 548 IPR011009 -
Spst1g00484 549 SUPERFAMILY alpha-D-mannose-specific plant lectins 73 188 IPR036426 -
Spst1g00484 549 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 31 154 - -
Spst1g00484 549 Pfam S-locus glycoprotein domain 215 324 IPR000858 GO:0048544
Spst1g00484 549 ProSiteProfiles Bulb-type lectin domain profile. 35 154 IPR001480 -
Spst1g00484 549 Pfam Protein tyrosine and serine/threonine kinase 463 547 IPR001245 GO:0004672|GO:0006468
Spst1g00484 549 CDD B_lectin 41 157 IPR001480 -
Spst1g00484 549 SMART blect_4 41 157 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g00484 Spst-Chr1 6265333 6271475 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g00484 448 548 Receptor kinase-like Gene Family AT4G11530 62.376 1.32e-35 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Spst1g00484 S_locus_glycop 8.2e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00484 - - cam:101513672 603.979