Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Spst1g00473 | ATGGATGATAAAGGGACAAGGATTGATCCAAAGACCGGGGTTAGCGTGTTTCACAATATGATTCACGTTGAATTTGGCTATATGAAAAATAACGAAGACTGGGTCGAGGTATTGGAAATGCTCAACTTTTGCCCCAAGCTTCAAGTTCTTGTCATTGACAAGATGTATCTTGAGTCCTTGCCTCAACATGGGGTTGAAGTAGCGGATTGGTCATACCGAGAATCTGTTCCTGTGGGCATTTCGTCCCTCAGATCGTGTCGTCTTAACAGTTACAAAGGTTTGAAAGGCGAGTTACGGTTTGCAGAATATGTTATGGGGAATGCAGAACATTTGCAGAGCATGATAATATCCAGTAGCATTTATGCAAATCCAGAGAAGAGTTTAGAAGGTCACAAATCCAGAACACCCATTTCAACAACAACATCATCATGCCATCTTTCATCATCAAAAAACAATGACCGTCGCCGGAGGGTAACCCTACATGAACAAATGTCAGCTTCCGATAGCAGCCGAGGGCGAGTGCTAACCGGCTTGACCCTTGACGACGTGTTAGCGAACCAGAAGAGACCTTCCTCAACGCCGCCCAGGGAATCACCACCAACCAAGAACAGAACCCTACTTGACATCATCAAAGACGACGAGACCAACAAAAAGGATCGCAGATCGTGGAAAGCTTTCAAGGATAAGATTCGACTAAAGCGCGCAGGCTCTGCTTGGACATCGTCAATTCATATCCCTACTTCGGATGTTCCTGTCCCTAACCCGAATAGCAGAATCTTTACCCAGTTTGGTCGCCGTAACTCGGTCCGATTCCCAACTCAGACTCTACCTTCGACTCAGGATCCCACTCACTCCGACTCGGACATGGCATCTAACTACATGACTCACCAGGTCGAGGACCTCGAGCCCGCCACCGAGGACTCCACTTCTCCGTCCACCGCGGCTCCGGCCATCCGCCCCCAGTTCAGCCGCCGAGGGTCCACCCGCTTCGCTGTCGAAGGCACCGAGGCCAACCCGGCCGGAAGCCTCCGGCCGCAGCTCTCGCGGAAGAACTCGACCAACATGCCGTCGGAGCCGTACCGGCGGGGGCGCGTGGTGACCTTCCGCGACAGCTTCGACGACGAGGAGGCAGAAGACGGCGAGAAGCTGGGGGAGGGGCGGGCGCTGTCGGCCAGGGAGGCGGTGGCGGCGCAGGAGGCGGCAGAAGCGGCGGCGCAGGAGGAGGAGGGCCAGGAGCAGGCCCCTGTGATGATGTCGCTGATGGACTTGTTAGAGGAGACTGATAGGGAAATGGGGCTTGAAGGGTCAAGGTATATATTGAGTGATGAAGAGGAAGATGAGGATGAAGATGAAGATGGTGAAGATGATGGAGTGGGTTCCATGGAGCACACTTGCTGTATTTGCATGGTCAGGCATAAGGCTGCTTCTTTTATACCTTGTGGCCACACTTTCTGCAGGATGTGTTCAAGGGAGCTTATGATTGATCGTTACCTAACAACAGGGTTTACTGTAATGTTGGGTACTAGTGGTAAGTAG | 1536 | 0.5215 | MDDKGTRIDPKTGVSVFHNMIHVEFGYMKNNEDWVEVLEMLNFCPKLQVLVIDKMYLESLPQHGVEVADWSYRESVPVGISSLRSCRLNSYKGLKGELRFAEYVMGNAEHLQSMIISSSIYANPEKSLEGHKSRTPISTTTSSCHLSSSKNNDRRRRVTLHEQMSASDSSRGRVLTGLTLDDVLANQKRPSSTPPRESPPTKNRTLLDIIKDDETNKKDRRSWKAFKDKIRLKRAGSAWTSSIHIPTSDVPVPNPNSRIFTQFGRRNSVRFPTQTLPSTQDPTHSDSDMASNYMTHQVEDLEPATEDSTSPSTAAPAIRPQFSRRGSTRFAVEGTEANPAGSLRPQLSRKNSTNMPSEPYRRGRVVTFRDSFDDEEAEDGEKLGEGRALSAREAVAAQEAAEAAAQEEEGQEQAPVMMSLMDLLEETDREMGLEGSRYILSDEEEDEDEDEDGEDDGVGSMEHTCCICMVRHKAASFIPCGHTFCRMCSRELMIDRYLTTGFTVMLGTSGK | 511 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Spst1g00473 | 511 | SUPERFAMILY | RING/U-box | 444 | 493 | - | - | |
Spst1g00473 | 511 | MobiDBLite | consensus disorder prediction | 440 | 457 | - | - | |
Spst1g00473 | 511 | MobiDBLite | consensus disorder prediction | 341 | 358 | - | - | |
Spst1g00473 | 511 | MobiDBLite | consensus disorder prediction | 438 | 458 | - | - | |
Spst1g00473 | 511 | MobiDBLite | consensus disorder prediction | 300 | 390 | - | - | |
Spst1g00473 | 511 | Pfam | Zinc finger, C3HC4 type (RING finger) | 465 | 494 | IPR018957 | GO:0046872 | |
Spst1g00473 | 511 | MobiDBLite | consensus disorder prediction | 127 | 205 | - | - | |
Spst1g00473 | 511 | CDD | RING-HC | 464 | 493 | - | - | |
Spst1g00473 | 511 | PANTHER | OS01G0917900 PROTEIN | 171 | 496 | - | - | |
Spst1g00473 | 511 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 438 | 499 | IPR013083 | - | |
Spst1g00473 | 511 | MobiDBLite | consensus disorder prediction | 133 | 148 | - | - | |
Spst1g00473 | 511 | Pfam | FBD | 81 | 116 | IPR006566 | - | |
Spst1g00473 | 511 | MobiDBLite | consensus disorder prediction | 271 | 290 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Spst1g00473 | Spst-Chr1 | 6169362 | 6175156 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Spst1g00473 | 170 | 496 | C3H Transcription Factor Family | AT3G07120 | 34.890 | 9.48e-41 | 148 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Spst1g00473 | - | - | var:108328735 | 499.204 |