Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00473 ATGGATGATAAAGGGACAAGGATTGATCCAAAGACCGGGGTTAGCGTGTTTCACAATATGATTCACGTTGAATTTGGCTATATGAAAAATAACGAAGACTGGGTCGAGGTATTGGAAATGCTCAACTTTTGCCCCAAGCTTCAAGTTCTTGTCATTGACAAGATGTATCTTGAGTCCTTGCCTCAACATGGGGTTGAAGTAGCGGATTGGTCATACCGAGAATCTGTTCCTGTGGGCATTTCGTCCCTCAGATCGTGTCGTCTTAACAGTTACAAAGGTTTGAAAGGCGAGTTACGGTTTGCAGAATATGTTATGGGGAATGCAGAACATTTGCAGAGCATGATAATATCCAGTAGCATTTATGCAAATCCAGAGAAGAGTTTAGAAGGTCACAAATCCAGAACACCCATTTCAACAACAACATCATCATGCCATCTTTCATCATCAAAAAACAATGACCGTCGCCGGAGGGTAACCCTACATGAACAAATGTCAGCTTCCGATAGCAGCCGAGGGCGAGTGCTAACCGGCTTGACCCTTGACGACGTGTTAGCGAACCAGAAGAGACCTTCCTCAACGCCGCCCAGGGAATCACCACCAACCAAGAACAGAACCCTACTTGACATCATCAAAGACGACGAGACCAACAAAAAGGATCGCAGATCGTGGAAAGCTTTCAAGGATAAGATTCGACTAAAGCGCGCAGGCTCTGCTTGGACATCGTCAATTCATATCCCTACTTCGGATGTTCCTGTCCCTAACCCGAATAGCAGAATCTTTACCCAGTTTGGTCGCCGTAACTCGGTCCGATTCCCAACTCAGACTCTACCTTCGACTCAGGATCCCACTCACTCCGACTCGGACATGGCATCTAACTACATGACTCACCAGGTCGAGGACCTCGAGCCCGCCACCGAGGACTCCACTTCTCCGTCCACCGCGGCTCCGGCCATCCGCCCCCAGTTCAGCCGCCGAGGGTCCACCCGCTTCGCTGTCGAAGGCACCGAGGCCAACCCGGCCGGAAGCCTCCGGCCGCAGCTCTCGCGGAAGAACTCGACCAACATGCCGTCGGAGCCGTACCGGCGGGGGCGCGTGGTGACCTTCCGCGACAGCTTCGACGACGAGGAGGCAGAAGACGGCGAGAAGCTGGGGGAGGGGCGGGCGCTGTCGGCCAGGGAGGCGGTGGCGGCGCAGGAGGCGGCAGAAGCGGCGGCGCAGGAGGAGGAGGGCCAGGAGCAGGCCCCTGTGATGATGTCGCTGATGGACTTGTTAGAGGAGACTGATAGGGAAATGGGGCTTGAAGGGTCAAGGTATATATTGAGTGATGAAGAGGAAGATGAGGATGAAGATGAAGATGGTGAAGATGATGGAGTGGGTTCCATGGAGCACACTTGCTGTATTTGCATGGTCAGGCATAAGGCTGCTTCTTTTATACCTTGTGGCCACACTTTCTGCAGGATGTGTTCAAGGGAGCTTATGATTGATCGTTACCTAACAACAGGGTTTACTGTAATGTTGGGTACTAGTGGTAAGTAG 1536 0.5215 MDDKGTRIDPKTGVSVFHNMIHVEFGYMKNNEDWVEVLEMLNFCPKLQVLVIDKMYLESLPQHGVEVADWSYRESVPVGISSLRSCRLNSYKGLKGELRFAEYVMGNAEHLQSMIISSSIYANPEKSLEGHKSRTPISTTTSSCHLSSSKNNDRRRRVTLHEQMSASDSSRGRVLTGLTLDDVLANQKRPSSTPPRESPPTKNRTLLDIIKDDETNKKDRRSWKAFKDKIRLKRAGSAWTSSIHIPTSDVPVPNPNSRIFTQFGRRNSVRFPTQTLPSTQDPTHSDSDMASNYMTHQVEDLEPATEDSTSPSTAAPAIRPQFSRRGSTRFAVEGTEANPAGSLRPQLSRKNSTNMPSEPYRRGRVVTFRDSFDDEEAEDGEKLGEGRALSAREAVAAQEAAEAAAQEEEGQEQAPVMMSLMDLLEETDREMGLEGSRYILSDEEEDEDEDEDGEDDGVGSMEHTCCICMVRHKAASFIPCGHTFCRMCSRELMIDRYLTTGFTVMLGTSGK 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00473 511 SUPERFAMILY RING/U-box 444 493 - -
Spst1g00473 511 MobiDBLite consensus disorder prediction 440 457 - -
Spst1g00473 511 MobiDBLite consensus disorder prediction 341 358 - -
Spst1g00473 511 MobiDBLite consensus disorder prediction 438 458 - -
Spst1g00473 511 MobiDBLite consensus disorder prediction 300 390 - -
Spst1g00473 511 Pfam Zinc finger, C3HC4 type (RING finger) 465 494 IPR018957 GO:0046872
Spst1g00473 511 MobiDBLite consensus disorder prediction 127 205 - -
Spst1g00473 511 CDD RING-HC 464 493 - -
Spst1g00473 511 PANTHER OS01G0917900 PROTEIN 171 496 - -
Spst1g00473 511 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 438 499 IPR013083 -
Spst1g00473 511 MobiDBLite consensus disorder prediction 133 148 - -
Spst1g00473 511 Pfam FBD 81 116 IPR006566 -
Spst1g00473 511 MobiDBLite consensus disorder prediction 271 290 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g00473 Spst-Chr1 6169362 6175156 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g00473 170 496 C3H Transcription Factor Family AT3G07120 34.890 9.48e-41 148
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00473 - - var:108328735 499.204