Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00469 ATGGCGACAAATTACCACAACCATATATTGCCCTCCCTTCTCCCCACCCCAAAAATTTCAATCCTCTCTTTCCCTCTTCTGTGCCATTTTCAACTACCTCCACCCACTTCTGTGTCTTCTTTTTCTTTCTTCACTCTCACCCTCATCAAAGCCACCCACATAATGGGACGCCCTGAATCCAATTTGCCACCCGGTTTTAGGTTCCACCCTACAGATGAAGAGCTCATTCTTCACTACCTTAGTAAAAAGGTAGCATCCATACCCTTGCCCGTTTCCATCATTGCTGAGGTTGATATCTACAAGCTAGATCCATGGGACTTGCCAGCAAAGGCAACCTTTGGGGAGAAAGAATGGTATTTTTTCAGTCCCAGAGACCGGAAGTACCCAAATGGTGCAAGGCCAAACAGGGCAGCTGCTTCAGGGTATTGGAAGGCCACTGGCACAGATAAGACCATAGTGACATCATTGCAAGGTGGAGTAGCTCAAGAGAACATTGGTGTGAAGAAGGCTTTGGTGTTCTACAAAGGAAGACCCCCAAAGGGTGTTAAGACCAATTGGATCATGCATGAATATCGCCTTGTAGACTACAACAAACCCATTAAGCTCAAAGACTCCTCCATGAGATTGGATGATTGGGTGTTGTGTCGGATTTACAAGAAGTCCAAACATGCTCTAACTTCAACAGAGGCAATAGTAGGGGTAGGTGAGGTAGATGAAGCAGAGGAACACCTATTCAAAGAGACCCTTTTGCCAATCTTAAAATCTCCAACTCCTCCTCCTCCTCCTCCTCCTCAGAACACATTGATGTCTCAGAAATCTGTGTCCTTCTCCAACCTGTTGGATGCCATGGACTACTCTGTTCTTAGCAGTTTCTTATCTGAGAATCATTCCAACCCACCAGGGATTGGATCCAGTGCAGGCTTCAACAGTGAGAATTTGGAACAACAATCCTCTCCAATCAACAACCCCGCCAATAGCTACACGTTTCAGAAGAACACCCAATTGAACCCTTCACTCTCCAACATGGAAAACATGAGGCCAAAGCGCCAACTTTCAGACATTGATGAGGAAACGTTGTACCCATCAAAGAAATACCTGAGTTCATCTTGCAACTTTCCTACTAACATCAACCCCCCATACGAGAATCCACAATGGAACTACCTCGTGAAGCAGTCATTGCTGAATCAGCGATTACTGCTTGGTCCTCATCTTCAATTTCAAGGATAA 1227 0.454 MATNYHNHILPSLLPTPKISILSFPLLCHFQLPPPTSVSSFSFFTLTLIKATHIMGRPESNLPPGFRFHPTDEELILHYLSKKVASIPLPVSIIAEVDIYKLDPWDLPAKATFGEKEWYFFSPRDRKYPNGARPNRAAASGYWKATGTDKTIVTSLQGGVAQENIGVKKALVFYKGRPPKGVKTNWIMHEYRLVDYNKPIKLKDSSMRLDDWVLCRIYKKSKHALTSTEAIVGVGEVDEAEEHLFKETLLPILKSPTPPPPPPPQNTLMSQKSVSFSNLLDAMDYSVLSSFLSENHSNPPGIGSSAGFNSENLEQQSSPINNPANSYTFQKNTQLNPSLSNMENMRPKRQLSDIDEETLYPSKKYLSSSCNFPTNINPPYENPQWNYLVKQSLLNQRLLLGPHLQFQG 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00469 408 Pfam No apical meristem (NAM) protein 63 193 IPR003441 GO:0003677|GO:0006355
Spst1g00469 408 ProSiteProfiles NAC domain profile. 62 220 IPR003441 GO:0003677|GO:0006355
Spst1g00469 408 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 59 321 - -
Spst1g00469 408 Gene3D NAC domain 71 225 IPR036093 GO:0003677|GO:0006355
Spst1g00469 408 FunFam NAC transcription factor 56 71 225 - -
Spst1g00469 408 SUPERFAMILY NAC domain 55 220 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g00469 Spst-Chr1 6125232 6126944 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g00469 54 408 NAC Transcription Factor Family AT3G04070 51.639 1.77e-108 321
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Spst1g00469 NAM 7.7e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00469 - - vun:114194335 686.797