Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00467 ATGGAAGAGCCTATCGTGTTGAACAAAGGTGAGGAGCCTCTAGATTTGCCTCCAGGTTTCAGGTTTCACCCCACAGATGAGGAGATAATTACTTATTATCTCACCGAGAAGGTGAAGAACAGTAGTTTCAATGCGATTGCTATTGGAGAGGCTGATTTGAATAAGTGTGAACCTTGGGATTTACCAAAGAAAGCCAAGATAGGAGAGAAAGAGTGGTACTTCTTCTGCCAAAAGGATAGAAAGTATCCAACCGGCATGAGAACCAATAGAGCAACAGAATCTGGGTACTGGAAGGCCACTGGAAAAGATAAGGAGATTTTCAAAGGGAAAGGCAACCTTGTTGGGATGAAGAAGACCCTTGTGTTCTATAGAGGGAGAGCTCCAAAGGGGGAGAAAACCAATTGGGTCATGCATGAATTCAGATTGGAGGGCAAATTTGCAAGTTACAACCTTCCTAAGGCAGCAAAGGACGAATGGGTTGTTTCAAGGGTTTTTCACAAGAACACAGATGTCAAAAAGTCCTCAATACCTGGCCTTTTGAGGATAAACTCTATTGGGGATGATCTTCTTGATTATTCTTCACTCCCACCTCTCATGGATCCTCCTTACGGAAACACCAACACCACTAACCCACTTTCATCAACTAAATCACAATCATCGGAGGGCTATTATCTTCCCAGTTTCTCCATCAACAACCACCACCAGCTTCTCATCAAACCAGAAGACCACCACAGAAACTATGAGATTCCCACAATTAGCTACACCTCCAACCAAGCCAATATCAGCAACAACGTTAACCCGATTGGAAACAACACACTCTCACAGCCCTCAAACATGTTCTCTGATTACTATGTGCACCAAAACAGGATCAAAAGTTCCATCATGCCAAGTATCGCCGGTTCGGGTTTCAGTAGCAACAACAACATTAACAACCACGATCAAGCTATTCTTAGAGCATTTGCAGCCAAGAACAACGACCACTTAGGTGGAATATTGGACAAACAGTGCAAGATGGAGCAATTCTCTTCTAACCACTCACAAGACACAGGCTTAAGCAACGACAGAAACACTGAAACATCCTCGGTGGTTTCGAAGCAAGACAATATGGGAAGAAATAGGGCATTGTACGAGGATCTTGAAGGTCCTTCTTCAGTTGCACCGCTCTCAGATTTGGAATGCCTGCAGTGGGATGACTTCTGA 1200 0.4392 MEEPIVLNKGEEPLDLPPGFRFHPTDEEIITYYLTEKVKNSSFNAIAIGEADLNKCEPWDLPKKAKIGEKEWYFFCQKDRKYPTGMRTNRATESGYWKATGKDKEIFKGKGNLVGMKKTLVFYRGRAPKGEKTNWVMHEFRLEGKFASYNLPKAAKDEWVVSRVFHKNTDVKKSSIPGLLRINSIGDDLLDYSSLPPLMDPPYGNTNTTNPLSSTKSQSSEGYYLPSFSINNHHQLLIKPEDHHRNYEIPTISYTSNQANISNNVNPIGNNTLSQPSNMFSDYYVHQNRIKSSIMPSIAGSGFSSNNNINNHDQAILRAFAAKNNDHLGGILDKQCKMEQFSSNHSQDTGLSNDRNTETSSVVSKQDNMGRNRALYEDLEGPSSVAPLSDLECLQWDDF 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00467 399 SUPERFAMILY NAC domain 13 168 IPR036093 GO:0003677|GO:0006355
Spst1g00467 399 ProSiteProfiles NAC domain profile. 16 167 IPR003441 GO:0003677|GO:0006355
Spst1g00467 399 MobiDBLite consensus disorder prediction 342 371 - -
Spst1g00467 399 Gene3D NAC domain 25 172 IPR036093 GO:0003677|GO:0006355
Spst1g00467 399 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 15 291 - -
Spst1g00467 399 FunFam NAC domain-containing protein 100-like 25 171 - -
Spst1g00467 399 Pfam No apical meristem (NAM) protein 17 142 IPR003441 GO:0003677|GO:0006355
Spst1g00467 399 MobiDBLite consensus disorder prediction 342 368 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g00467 Spst-Chr1 6104790 6106275 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g00467 1 397 NAC Transcription Factor Family AT5G18270 49.265 5.46e-113 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Spst1g00467 NAM 4.3e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00467 - - gmx:100784372 685.256