Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00434 ATGCCTCAGTTTGATGGTTGTGTGTACCATGTGTATGTCTGGTCACTTGCAGTGACCGAAAACCAGGGTTCATGCTTCATTTTCAAGCATTTGGTGGGTGGTGGCTTAAGTACTGGCTACTTGTTCAACCAAATTGTGTTTGCAGCTGGAATATTTGTGGGGCCTACTGCTCTTGTGACCATGACCAACCTTATGAACATGGATATGTGCCAAAATGTATCAGTTTCCGGTGAATGCCACCAAGGACAGTTCCTTGCCCCTTCTTGCTCAAGCAGCCTTGAGGACCTCTTCTCTGCTCAGAACACGGAAGTGGATGTTGATTTGGAGTGGCTTTCAGAGTTTGTTGAAGACTGCTTTTCAAGCCCCCCAAGCTTTGTCTTGGTACCTTCTGGAGTAAAGACCACAAGCACAACAACAAGTATCAACCCTTCTTCAGGCACATTGAAGAGACCCCTACAAAATGAGTCTCCTCTGCAGAATTTTGCTGTTCCTGGGAAGGCCAGGAGCAAAAGGAAAAGGCTTTCAGCCCCTAGAACCAAGGACCCTTTAAGTATATGGTCACACCATTTGAACCCCCAAAATGAAGCCTTGAATTCTGACCCTCCTCTTCTCAAACAGGCTTACTGGTTGGCTGACAGTGAACTGATTATGCCTAAGCCAAAGGAGGGGCAAGAAGAAGTGACCAAAGTGGCTGGAGAAGTGGTGGAGAAGGAGATTGTGATTAAGAAGGAAAGCTTTGGGGACTCTGAGCTTGAAGGTAGCAATGGTCAACAACCAATGCCAAGGAGGTGCACCCATTGCTTGGCTCAGAGGACCCCACAGTGGAGGGCAGGACCATTAGGGCCAAAGACACTTTGCAATGCATGTGGAGTGAGGTATAAGTCTGGTAGATTGCTACCAGAGTATAGGCCAGCCAAGAGTCCTACTTTTGTTAGCTATTTGCATTCCAATTCCCACAAGAAAGTCATGGAGATGAGGATGGCTGTTTATTCTTCCATTTCTAGTGAGCAGTAG 1014 0.4694 MPQFDGCVYHVYVWSLAVTENQGSCFIFKHLVGGGLSTGYLFNQIVFAAGIFVGPTALVTMTNLMNMDMCQNVSVSGECHQGQFLAPSCSSSLEDLFSAQNTEVDVDLEWLSEFVEDCFSSPPSFVLVPSGVKTTSTTTSINPSSGTLKRPLQNESPLQNFAVPGKARSKRKRLSAPRTKDPLSIWSHHLNPQNEALNSDPPLLKQAYWLADSELIMPKPKEGQEEVTKVAGEVVEKEIVIKKESFGDSELEGSNGQQPMPRRCTHCLAQRTPQWRAGPLGPKTLCNACGVRYKSGRLLPEYRPAKSPTFVSYLHSNSHKKVMEMRMAVYSSISSEQ 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00434 337 ProSiteProfiles GATA-type zinc finger domain profile. 258 294 IPR000679 GO:0006355|GO:0043565
Spst1g00434 337 MobiDBLite consensus disorder prediction 136 155 - -
Spst1g00434 337 CDD ZnF_GATA 263 310 IPR000679 GO:0006355|GO:0043565
Spst1g00434 337 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 259 322 - -
Spst1g00434 337 ProSitePatterns GATA-type zinc finger domain. 264 289 IPR000679 GO:0006355|GO:0043565
Spst1g00434 337 Gene3D - 254 325 IPR013088 GO:0006355|GO:0008270
Spst1g00434 337 SMART GATA_3 258 312 IPR000679 GO:0006355|GO:0043565
Spst1g00434 337 Pfam GATA zinc finger 264 298 IPR000679 GO:0006355|GO:0043565
Spst1g00434 337 PANTHER GATA TRANSCRIPTION FACTOR 88 328 - -
Spst1g00434 337 FunFam GATA transcription factor 254 337 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g00434 Spst-Chr1 5759128 5762596 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g00434 106 326 C2C2-Gata Transcription Factor Family AT4G32890 41.558 1.01e-43 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Spst1g00434 GATA 1.6e-14 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00434 - - gmx:100786479 450.669
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g00434 1 5759128 5762596 Spst1g00434 1 5759128 5762596 ECH
Spst1g00434 1 5759128 5762596 Spst4g03511 4 76016339 76017661 PCT