LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Spst1g00429	ATGGCTTTCGTTTCTTCCCCTCCCTTTGCGTTACAGGACACAGACTCAAAGCCCTGTGATGCGGAATCAGCAGAACGAGTGACCCTTTTGATTAAGCACCTACCAGAAGCCATTCCTCATGACACCCTTTATCGAATCTTCACCAATTTCGGTGCTTTCTCAGTGCGTCCTTGCTCTAGTGCCAGTGTCTCAATTGTCTCAACTTTCTGGTTGGGCTACACCTTTGGACTAGTAGATGAAGCAGTAAACCCAACTGGTGGGGCTGTCTGCCACATCTGTAGCAACAATTGCATTGTTCCATATATTCTTAACATGGATTTGTTTGACCCAATAGCTGATAATGCTAGAGGAATTATAGAGATGAGTGGGCAGCGTATAAGTGCCCAAGGAATGACTAACGTCCTTGATGCCATAGGAACAGAACCAAAGCTTCCACCAAAGGATTTGCTATCGGTTTTGCTGCTCTTGCATCTGTCCTTTAGTGCTTATATGGACGAGTGCTTGGGACTGTTTGTTTACTGCACAAGAGGTGTTTTGGCAATCATTTCACCTATTGTAGTTGCTCTTCTTTTCCAAATTCTGGGTTACTATACAGATTGCCATATAGTTAAGGCCAAAATTATGGCTTCTTTGCTTATGTTTGCAATACTGTCAGGATTGCAAGGGTTTATCTGGTTGAAAAATAGTGCTTTTGTGGATTTCAAAAATGAAATTATGGCATCTCAAGCACAACGTCAACTAAATGGGTTGAGATTTCTTGGTAAAGTCTTGTCAGCAGAGAGAGCTAATAACCTAACTGGTGAAAAAAGTAGCGAAGATCAGTTGGGTAAGGACTCTAAAACATCAATGCTGAAGAATGCAAATTTAACCAAACCCATTGATGGAGATACAAAATCAAGAGGTCTCCCGGTTCCAGAGCCAATTGCTGATAGACTTGGTGTCAATTATCCTTTTCCTCCTCATCTTGAGTATGCTGCTGCTTCTTATTTTGAAGTTCTTGTTAGTATTTGTTGCCTTATTGCAAAAAGCAATGCTAGGTATGCTTACCCTCCACCTGATGGAAATATATTGACCAACATTGTGAATGCTCTAATTGCTGTTCCCCGCTTTTACACTCAGGTTGTTCAAGCATTACTTGAAGCTGCTAAAGAATTTTTGGTTCTACACTTGATGAACAAAATGAACATTCCGGCTCCATTTCGAATGGCTTTGCCCACTCCTCCATTGCCTCCAGAGGCACCAGTACCACCTCCACCTCCTACTGTAACTGCAAATCCTCAGTCTTCTGATCTGTCCAGTAGCGAATCGGAGATGGAATCTTCTGAAGAGGAGTATGAAGCAAACACCAAAAGATCTGGACAAAAGCGTGCAAGGCATGAGACCATTGTTGGCCCTGCTATTGATAAAGGCGTGGCTCATGAGTCTGTTGGAGTAAAACCAGCAACCTTGGTCCCAAAAGAAATCCCTATAATAAAAAAGAACCATGTCTTAAAGATAAACATTGTCCCCAAATCAACAGTAAACGAACATAAATATGATGAGACATCACAAGAGTTACAAGAGCCAGAAAAAGATGTTCCAAACCCTAACAAATTTTTGACTGCAGAAGAATTAGAGAAAGGAAAGTTGCCTCCGGAGGAAATCTTATCCCTTCCAATGTTTAAGAACTATACAGCTGGAAACCCTGCTCCTGTGTTGTATGTAAAGAATTTGGCAAAAGATGTGATTGCTGATGATTTCTATTTTATATTTGGGACCTTGTTTGGAAGTGTTGAGGCTGCTAAGTTTGGTCTTCAAGTCAAACTAATGCAGGAAGGACGAATGAGAGGTCAAGCATTTCTGACATTCCCCTCAATTGAATTGGCTCATCATGCTCTGAATCTGGTGAATGGATATGTATTAAAAGGAAAGCCAATGATTATACAGTTTGGTCGAAATCCCGCTGCTGCTAAGGCAACTTAG	1962	0.4144	MAFVSSPPFALQDTDSKPCDAESAERVTLLIKHLPEAIPHDTLYRIFTNFGAFSVRPCSSASVSIVSTFWLGYTFGLVDEAVNPTGGAVCHICSNNCIVPYILNMDLFDPIADNARGIIEMSGQRISAQGMTNVLDAIGTEPKLPPKDLLSVLLLLHLSFSAYMDECLGLFVYCTRGVLAIISPIVVALLFQILGYYTDCHIVKAKIMASLLMFAILSGLQGFIWLKNSAFVDFKNEIMASQAQRQLNGLRFLGKVLSAERANNLTGEKSSEDQLGKDSKTSMLKNANLTKPIDGDTKSRGLPVPEPIADRLGVNYPFPPHLEYAAASYFEVLVSICCLIAKSNARYAYPPPDGNILTNIVNALIAVPRFYTQVVQALLEAAKEFLVLHLMNKMNIPAPFRMALPTPPLPPEAPVPPPPPTVTANPQSSDLSSSESEMESSEEEYEANTKRSGQKRARHETIVGPAIDKGVAHESVGVKPATLVPKEIPIIKKNHVLKINIVPKSTVNEHKYDETSQELQEPEKDVPNPNKFLTAEELEKGKLPPEEILSLPMFKNYTAGNPAPVLYVKNLAKDVIADDFYFIFGTLFGSVEAAKFGLQVKLMQEGRMRGQAFLTFPSIELAHHALNLVNGYVLKGKPMIIQFGRNPAAAKAT	653

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Spst1g00429	653	FunFam	U11/U12 small nuclear ribonucleoprotein 65 kDa protein	559	653	-	-
	Spst1g00429	653	Pfam	Inorganic H+ pyrophosphatase	98	140	IPR004131	GO:0004427\|GO:0009678\|GO:0016020\|GO:1902600
	Spst1g00429	653	MobiDBLite	consensus disorder prediction	510	525	-	-
	Spst1g00429	653	SUPERFAMILY	RNA-binding domain, RBD	227	647	IPR035979	GO:0003676
	Spst1g00429	653	Coils	Coil	431	451	-	-
	Spst1g00429	653	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	564	646	IPR000504	GO:0003723
	Spst1g00429	653	MobiDBLite	consensus disorder prediction	443	457	-	-
	Spst1g00429	653	MobiDBLite	consensus disorder prediction	407	457	-	-
	Spst1g00429	653	Gene3D	-	559	653	IPR012677	-
	Spst1g00429	653	CDD	RRM2_RBM40_like	565	644	-	-
	Spst1g00429	653	Gene3D	-	186	265	IPR012677	-
	Spst1g00429	653	MobiDBLite	consensus disorder prediction	510	529	-	-
	Spst1g00429	653	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	566	638	IPR000504	GO:0003723
	Spst1g00429	653	PANTHER	UNCHARACTERIZED	227	327	IPR045164	-
	Spst1g00429	653	SMART	rrm1_1	565	642	IPR000504	GO:0003723
	Spst1g00429	653	MobiDBLite	consensus disorder prediction	407	424	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Spst1g00429	Spst-Chr1	5671863	5678610	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Spst1g00429	177	220	Primary Pumps ATPases	AT1G16780	54.545	2.80e-07	52.0

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Spst1g00429	K13157		-	gmx:100818499	628.632