Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00405 ATGAACCCACGAACGACGTCGTCGTCGTCAAAGGCGAAGAAGAAGCAAACGGCACTCGAGCCGCACCAAACATCATGGGGCGGGAGATACCTCGGCGTGCGGCGGAGGCCGTGGGGGCGGTATGCGGCGGAGATTCGGGACCCTTCCACCAAGGAGCGGCACTGGCTGGGCACCTTCGACACCGCCGACGAGGCCGCACTCGCCTACGACCGAGCCGCACGTGCCATGCGTGGCTCACGTGCGCGCACCAACTTCGTCTATGCCGACACCATTCCCGGCTCATCCCTCACTTCCATCATCTCCCCCGACCAACGACCCCTCCAGGAACCCGACCCGGTTCTAACACTCGACCCGTTTTCCCTCCTCGGGTTTCCCTCCGCTTCTTCCTCCTACGATAGCACAGCAACTTCCCACTTGAGTCAACAAACGTTTTTCCAAACCAACAATAATAATAATAATTACAATCCTTACAATAACGATGATAGTGATAACAGAGGGAGCACGGTGGAGCTTCCTCCACTGCCACCAGATATTACTAGCTCCATTGGTTACGAGATGGAACAGCAGAGTGATGGATTTTATTGGGAGCAAAGTCCAATGTTTAGCGCAATGCCAACAGTGTCAGAGAATGTGGGTGCAGAGTCTCAAGTTTTTGGGAGCTCCTCCTATTTCTTATGA 678 0.5487 MNPRTTSSSSKAKKKQTALEPHQTSWGGRYLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTADEAALAYDRAARAMRGSRARTNFVYADTIPGSSLTSIISPDQRPLQEPDPVLTLDPFSLLGFPSASSSYDSTATSHLSQQTFFQTNNNNNNYNPYNNDDSDNRGSTVELPPLPPDITSSIGYEMEQQSDGFYWEQSPMFSAMPTVSENVGAESQVFGSSSYFL 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00405 225 ProSiteProfiles AP2/ERF domain profile. 29 86 IPR001471 GO:0003700|GO:0006355
Spst1g00405 225 FunFam Ethylene-responsive transcription factor 2 29 87 - -
Spst1g00405 225 MobiDBLite consensus disorder prediction 1 29 - -
Spst1g00405 225 MobiDBLite consensus disorder prediction 147 172 - -
Spst1g00405 225 PRINTS Ethylene responsive element binding protein signature 52 68 IPR001471 GO:0003700|GO:0006355
Spst1g00405 225 PRINTS Ethylene responsive element binding protein signature 30 41 IPR001471 GO:0003700|GO:0006355
Spst1g00405 225 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 13 148 - -
Spst1g00405 225 CDD AP2 29 85 IPR001471 GO:0003700|GO:0006355
Spst1g00405 225 MobiDBLite consensus disorder prediction 147 166 - -
Spst1g00405 225 MobiDBLite consensus disorder prediction 1 23 - -
Spst1g00405 225 SUPERFAMILY DNA-binding domain 29 86 IPR016177 GO:0003677
Spst1g00405 225 Gene3D AP2/ERF domain 28 87 IPR036955 GO:0003700|GO:0006355
Spst1g00405 225 SMART rav1_2 29 92 IPR001471 GO:0003700|GO:0006355
Spst1g00405 225 Pfam AP2 domain 30 78 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g00405 Spst-Chr1 5269280 5269957 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g00405 7 220 AP2-EREBP Transcription Factor Family AT5G13910 49.776 1.65e-49 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Spst1g00405 AP2 8.2e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00405 K09286 - gmx:100792421 253.447
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g00405 1 5269280 5269957 Spst1g00405 1 5269280 5269957 ECH
Spst1g00405 1 5269280 5269957 Spst4g03469 4 75342902 75343741 PCT