Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00401 ATGAGTTTTCAAGACATCCAAGGTGGGCCACACCCTTCCTCTCGCCGGAGCCAGTCGCCGTCGCAGGCCGTCGCCGCCGGAATTTTCCAGATCAACACGGCCGTCGCCACTTTTCAGCGACTCGTCGATGGCGTTGGAACCGTTAAAGACACTCCTGAACACCGTCAGAAGCTGCACAATACAAGGCAGAGAATATTGCAACTGGTGAAGGATACTTCTGCTAAGCTCAAATCCTTGAGTGAATCTGATCGTGATGCTAATGCCAATGCCAGTAAGAAAATTGAAGATGCTAAGCTTGCTAGAGATTTCCAAACGACATTGCAAGAGTTCCAGAAAGTACAACAGCTTGCTTCTGAGCGCGAATCGGCTTACACCCCTGCTGCCCCCCCTTCTTCTTTACCAACAAGCTCTGGTTCTGGTGAAGAATTGGTTGGGATAGATGTTGAAAGCCAACCTTTTATTAGAGAGCAGAAGAGGCAAGAGATACTTCTATTGGATAATGAAATATCATTCAACGAGGCCATGATTGATGAAAGAGAACAGGGAATAAGAGAGGTAGAAGAGCAAATTGGACAAGCAAATGAAATATTCAAGGACCTTGCTGTTCTTGTTCATGACCAGGGAGTTGTTATTGATGACATTCAATCAAATATTGATGCTTCTGCTGGTGCAACAATCCAAGCTAGGGTCCAGCTAGCCAAGGCTTCCAAAAGTGTGAAATCCAGAACCTCATGGTGTTGGTGGGTGCTTGTAATTTTTGTGGTCGTGCTGGTCATATTACTTATTGTACTCATTTTTTATGTTTTGACCAAAAGAGATGTGTTAGAAAGTTCTGCAATGCAGTTTGATATGTTGACTGCATTTGAAGCTGGAAGAAGTTGGCGAGTGCCTTCCTTGTGTGCATATTTTCACGTCCATGCTGATTGTCTGTGTTAA 936 0.4466 MSFQDIQGGPHPSSRRSQSPSQAVAAGIFQINTAVATFQRLVDGVGTVKDTPEHRQKLHNTRQRILQLVKDTSAKLKSLSESDRDANANASKKIEDAKLARDFQTTLQEFQKVQQLASERESAYTPAAPPSSLPTSSGSGEELVGIDVESQPFIREQKRQEILLLDNEISFNEAMIDEREQGIREVEEQIGQANEIFKDLAVLVHDQGVVIDDIQSNIDASAGATIQARVQLAKASKSVKSRTSWCWWVLVIFVVVLVILLIVLIFYVLTKRDVLESSAMQFDMLTAFEAGRSWRVPSLCAYFHVHADCLC 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00401 311 SMART SynN_4 8 122 IPR006011 GO:0016020
Spst1g00401 311 Pfam SNARE domain 210 261 IPR000727 -
Spst1g00401 311 Gene3D - 10 130 - -
Spst1g00401 311 MobiDBLite consensus disorder prediction 1 22 - -
Spst1g00401 311 SUPERFAMILY t-snare proteins 19 224 IPR010989 GO:0016020|GO:0016192
Spst1g00401 311 CDD SNARE_Qa 176 234 - -
Spst1g00401 311 MobiDBLite consensus disorder prediction 118 142 - -
Spst1g00401 311 PANTHER SYNTAXIN 22 255 IPR045242 -
Spst1g00401 311 Gene3D - 167 268 - -
Spst1g00401 311 FunFam Syntaxin-22 like 14 128 - -
Spst1g00401 311 FunFam Syntaxin-22 like 166 266 - -
Spst1g00401 311 SMART tSNARE_6 168 235 IPR000727 -
Spst1g00401 311 Pfam Syntaxin-like protein 25 124 IPR006011 GO:0016020
Spst1g00401 311 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 173 235 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g00401 Spst-Chr1 5213903 5216426 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g00401 1 253 SNARE and Associated Proteins AT5G46860 59.922 3.64e-100 293
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00401 - - gmx:100787141 421.779
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g00401 1 5213903 5216426 Spst1g00401 1 5213903 5216426 ECH