Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00384 ATGAGCAAGGTTCATAATGACAATTACTCGCTTTTCGAAGCTACACCTTCTGTTTCACACCCGAACCAGGTCCGAGGATCCGTTGGGTCAAGAGTGGGCCCCATCCAAACCGCAGGCTCGTTTGGCAAACACACAGGAGGTGGCACAGGTTCGGACAACCAGCTCTTCCATACCAGTTCCAACACACCCCCTTACTGGAATTTCCCGCTCACTTACAGTGTCGCTTTCGCTTTGCCGACTGAAAGAACAACAAAAACGTTGGGGGCGGGGGTTACTGGCATTCTTGCAATGTGGGAAATGCTGGATAGTGAATTTGCAATGCATTGTGTTCTGTTCCCGCAATTCCCTCATACTCTGTCACTTCTTCATGATTTTCTTGATTTGGCCTTGGTTGGTATTCAGAATATGAGCTGGCTTATTGACATTGGAGGATTTGCAAAGAAAGTGAAAAGCACTACTCTATCTTCAGCTGATCAAATCAAGGATTGTGGTGCATATCGAGAATGTCCAAACTGTTACTATCGTATTGATAACAGTGATGTTTCTACTGAGTGGCCTGGCTTTCCTCTTGGTGTGAAGTTTGATGCTTCTGATGTAGAACTCTTAGAACATTTAGCAGGAAAACTTGGTGTTGGAAACACACAGCCACATGTGTTTATCAATGAGTTCATCCCAACTCGGGAAGAAGACCATGGTATATGCTACACGCATCCGGAAAATCTTCCAGGTGCTAAGAAAGATGGGAGTTACGTCCATTTCTTTCATAAAACAATCAATGCTTATGCTTCGGGTCAAAGAAAGCGTCGAAAGATTCATCATCAACAGGGTTTGACTGAGGAGCATGTGCGTTGGCACAAGACTGGTAGGACAAAAGCTATAATGGAAAATGGAATTTGCAAGGGCTATAAGAAAATCATGGTTCTTTATGTAAGATCTAAGAGTGGGTCCAAACCCCATAAATCGAACTGGGTAATGCATCAGTACCATCTAGGGTCTGAAGAAGATGAAAAGGAAGGTGAATATGTGGTTTCCAAAATTTTTTATCAACAAAAAAAGCAGACTGAGGAAAATGAGGACGATCCAATGCCTGAAGATACTGACAATATAATGTCAAGAACAGGTCCAAGGACTCCAAAACCAAATTCCCCCAATCCACCTCGTGCAGGAAAATCTGTTGATTGTGATGATTACATTGATGAAACTGTACATCTGTCTTCTGCCCAGGATGCCAAGACAATCCCTGGAGAATCACATACCCCACTATCTGATATTCAGGACCTAGACAATTCTGCTTGGTTAGCTGGCGAATCACAGGCTGAGGAACACACTGCATATGATGGCTTGGACGACATATTATTGTGCAAGGAGATCTTAGACTCTTCTGCTCGGTTAAATGATTCTGAATTGGACTCCACCAATCTCTCTGACTTAGCATTCTTTGATAACCAAATGGCTAGAAATGATAACGAATCTTGCGGAATTTCTGTCCTGGATACACTGGAATTGGATACTCCTCCAGATTTTGATTTTTCTACAGTATCCTTGATTGGATGGACTGGTTATGATGTTCTTTTGGATACCAAATCCAGAAGTAAGCTGAATCTAGCAAGAGCTGGAATTTTGGCCTTCATGTGA 1635 0.4281 MSKVHNDNYSLFEATPSVSHPNQVRGSVGSRVGPIQTAGSFGKHTGGGTGSDNQLFHTSSNTPPYWNFPLTYSVAFALPTERTTKTLGAGVTGILAMWEMLDSEFAMHCVLFPQFPHTLSLLHDFLDLALVGIQNMSWLIDIGGFAKKVKSTTLSSADQIKDCGAYRECPNCYYRIDNSDVSTEWPGFPLGVKFDASDVELLEHLAGKLGVGNTQPHVFINEFIPTREEDHGICYTHPENLPGAKKDGSYVHFFHKTINAYASGQRKRRKIHHQQGLTEEHVRWHKTGRTKAIMENGICKGYKKIMVLYVRSKSGSKPHKSNWVMHQYHLGSEEDEKEGEYVVSKIFYQQKKQTEENEDDPMPEDTDNIMSRTGPRTPKPNSPNPPRAGKSVDCDDYIDETVHLSSAQDAKTIPGESHTPLSDIQDLDNSAWLAGESQAEEHTAYDGLDDILLCKEILDSSARLNDSELDSTNLSDLAFFDNQMARNDNESCGISVLDTLELDTPPDFDFSTVSLIGWTGYDVLLDTKSRSKLNLARAGILAFM 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00384 544 Gene3D NAC domain 197 354 IPR036093 GO:0003677|GO:0006355
Spst1g00384 544 MobiDBLite consensus disorder prediction 350 393 - -
Spst1g00384 544 ProSiteProfiles NAC domain profile. 188 349 IPR003441 GO:0003677|GO:0006355
Spst1g00384 544 FunFam NAC domain-containing protein 8 197 353 - -
Spst1g00384 544 SUPERFAMILY NAC domain 174 349 IPR036093 GO:0003677|GO:0006355
Spst1g00384 544 Pfam No apical meristem (NAM) protein 189 330 IPR003441 GO:0003677|GO:0006355
Spst1g00384 544 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 136 437 IPR044799 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g00384 Spst-Chr1 5023022 5027453 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g00384 165 349 NAC Transcription Factor Family AT4G28500 50.802 8.78e-60 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Spst1g00384 NAM 1.2e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00384 - - gmx:100780442 629.017