Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00372 ATGCTCAGAGTTGATTCAATGAGATATTCTTACCTCTTTCTTGTGGTTCTTACTTGGTTTGTGTTCATCCATAGTACCCATGAACTGCAACTTGCTCAGTCCCAAGTTCTGTTTCAGTTAAGAAAGTATCTGGAGTACCCTACCTCCCTGCAAATGTGGAAAAATTACTCTAGAGACCTTTGTAGCCTTCCTCCATCTGCTCATTTGAGCATTAAGTGTGAGGGTAATTCAGTAACTGAGCTTAAAATTATGGGAGATAGAGATAGAGCTGCGAAGGTTGACAAGTTCAATGGATATGCAGTTCCGAATCAGACACTGTCAATGAGCTTCTCTATTGATTCTTTTGTGACTACATTGGCAAGGTTAACCAACTTAAGGGTCCTTAGATTGGTGTCCTTGGGCATTTGGGGTCCACTTCCTGAAAAAATCCATAGGCTGTCTTTGCTTGAAGTTTTGGATATGAGCTTAAATTTCTTATATGGTTCCGTGCCACCAAGAATGTCTACAATGACTAAGCTTCATACAATCACACTTGATGGAAATTATTTGAACAGCACAATGCCTGACTGGTTTGATTCTTTATCCAATCTAAATGTCTTGAGTTTGAAGAGCAACCACTTAAAGGGTTCATTTCCCTCCTCACTATGCAAAATTGGGAGTCTTACTGATATTTCCTTGTCCCACAATGAGTTGTCTGGTGGGTTGCCTGATCTCACTGCTCTCTCTGGCCTACATGTACTTGATTTAAGGGAAAATCATTTAGATTCTGAACTGCCAATGATGCCTAAAGATGTAGTCACAATTCTGCTCAGCAAAAATTCTTTTTCAGGTGAGATACCAAATCAGTTTAGTGAATTGGGTCATCTTCAACATCTAGATCTTTCATCAAATCTTCTAAGTAAGATCCCCCCATCTTCCTTGTTCTCATTACCAAACATTAGCTATTTGAACTTAGCCAGCAACGAGCTATGTGGGCCTCTTCCACAAAAACTAAACTGTGGCAGCAAACTTGGGTTTGTGGATATCTCTAGTAACAAGTTAAATGGCGAACTTCCTTCTTGCTTGGCTAATACATCAGGTAAAAGGGTTGTTAAATATGGTGGAAACTGTTTATCTGTTGATTCTCAACCTCAGCAGCGAGGGACTTACTGTAAACAGTCCAGTTCAGGAAGAAAGAACTTCTGGAAATTGAAAATAGCTGTAGCAGTTGCCATTATTATTGTAATTGTGCTTGTACTTTCAGCTTTTGGAGTTCTCTTTTATAGAAAATTTTATTCAAGGGAGATGTATAGGCATAAGATGTTGCCTAAGGCTGTTCAAGATAACTCAACAACAGGAGTTTCTTCTGAAGTCCTTGCTAGTGCTAGATTCATTTCTCAAGTAGCAAAGCTAGGGACACATGCTATTCCTACCTGTCGACAGTTTTCAATTGAAGAGTTGAATGAAGTCACAAGAAACTTTGAGTCGTCAACATATATGGGTGAAGGCTCCTTAGGAAAGCTGTACAAAGGTAAACTTGACAATGGATCCTATGTGGTGATAAGATGTGTGGCTCTGTCAAAGAAATGCTCAATACAAAATCTTAAAGCTCGGTTGGATTTCCTCTCAAAGCTTCACCATCCAAATTTGGTTAGCCTTTTGGGTCATTGTGTTGATAGTGACCAACAAAATGATTATAGTGGCCTCAAACTTCATCTTGTATATGAGTATGTACCAAATGGGAATTATCGAACCCATCTGTCAGAATTTTCATCAGACAAGGCACTGAAGTGGTCTGATAGATTAGCAATTTTAATTGGAGTTGCCAAAGCTGTGCATTTTTTACATACTGGAGTTATACCGGGTTGTTTCAGAAACCAATTGAAGACAAACAATATTTTACTTGATGAGCATCACTTTCCAAAACTAAGTGACTATGGTATGTCCATAATTGCTGAGGAAATCGAATACCTTCAGGCAAAGGGAGAAAATCCAAAATCATGCCAAAGAGAAAAGTTAGAAGATGATGTCTACAATTTCGGATTGATATTGTTCGAGTCTCTTGTTGGACCCATAGCATGCCAAAAAGGAGAAGCATATTTTCTTGATGAAAAGAGATCCTTTGACAGTCAAGATGGTAGAATTAAAATGGTGGATCCAGTAGTGTTGACCACTTGCTGTCCAGAGTCATTATCAATTGCAACATCTATTGCAACCAAATGCATATCCCCAGAATCTCCATCTCCTCCCTCTTTTGAAGAAGTCTTATGGAACCTACAGTATGCAGCTCAAGTCCAAGCCACAGCAGATGCTGACCAAAAATCAGAATCTACATCTTAA 2319 0.3903 MLRVDSMRYSYLFLVVLTWFVFIHSTHELQLAQSQVLFQLRKYLEYPTSLQMWKNYSRDLCSLPPSAHLSIKCEGNSVTELKIMGDRDRAAKVDKFNGYAVPNQTLSMSFSIDSFVTTLARLTNLRVLRLVSLGIWGPLPEKIHRLSLLEVLDMSLNFLYGSVPPRMSTMTKLHTITLDGNYLNSTMPDWFDSLSNLNVLSLKSNHLKGSFPSSLCKIGSLTDISLSHNELSGGLPDLTALSGLHVLDLRENHLDSELPMMPKDVVTILLSKNSFSGEIPNQFSELGHLQHLDLSSNLLSKIPPSSLFSLPNISYLNLASNELCGPLPQKLNCGSKLGFVDISSNKLNGELPSCLANTSGKRVVKYGGNCLSVDSQPQQRGTYCKQSSSGRKNFWKLKIAVAVAIIIVIVLVLSAFGVLFYRKFYSREMYRHKMLPKAVQDNSTTGVSSEVLASARFISQVAKLGTHAIPTCRQFSIEELNEVTRNFESSTYMGEGSLGKLYKGKLDNGSYVVIRCVALSKKCSIQNLKARLDFLSKLHHPNLVSLLGHCVDSDQQNDYSGLKLHLVYEYVPNGNYRTHLSEFSSDKALKWSDRLAILIGVAKAVHFLHTGVIPGCFRNQLKTNNILLDEHHFPKLSDYGMSIIAEEIEYLQAKGENPKSCQREKLEDDVYNFGLILFESLVGPIACQKGEAYFLDEKRSFDSQDGRIKMVDPVVLTTCCPESLSIATSIATKCISPESPSPPSFEEVLWNLQYAAQVQATADADQKSESTS 772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00372 772 ProSiteProfiles Leucine-rich repeat profile. 288 309 IPR001611 GO:0005515
Spst1g00372 772 Pfam Leucine rich repeat 267 323 IPR001611 GO:0005515
Spst1g00372 772 Pfam Leucine rich repeat 172 231 IPR001611 GO:0005515
Spst1g00372 772 Gene3D Transferase(Phosphotransferase) domain 1 571 771 - -
Spst1g00372 772 SUPERFAMILY L domain-like 33 376 - -
Spst1g00372 772 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 450 570 - -
Spst1g00372 772 Pfam Protein tyrosine and serine/threonine kinase 491 679 IPR001245 GO:0004672|GO:0006468
Spst1g00372 772 SUPERFAMILY Protein kinase-like (PK-like) 470 752 IPR011009 -
Spst1g00372 772 Gene3D Ribonuclease Inhibitor 31 264 IPR032675 -
Spst1g00372 772 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 265 389 - -
Spst1g00372 772 ProSiteProfiles Protein kinase domain profile. 487 755 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst1g00372 772 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 30 263 - -
Spst1g00372 772 SMART LRR_typ_2 286 309 IPR003591 -
Spst1g00372 772 SMART LRR_typ_2 170 193 IPR003591 -
Spst1g00372 772 SMART LRR_typ_2 194 218 IPR003591 -
Spst1g00372 772 SMART LRR_typ_2 241 264 IPR003591 -
Spst1g00372 772 Gene3D Ribonuclease Inhibitor 265 390 IPR032675 -
Spst1g00372 772 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 104 359 - -
Spst1g00372 772 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 571 771 - -
Spst1g00372 772 Gene3D Phosphorylase Kinase; domain 1 456 570 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g00372 Spst-Chr1 4901219 4905262 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g00372 14 697 Miscellaneous Gene Families AT5G14210 57.864 0.0 789
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-1 Spst1g00372 PK_Tyr_Ser-Thr 5e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00372 - - gmx:100813412 1325.46