Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00368 ATGGGCACACTAGAAATGATCATTGCATTCCACATGAAGGTTTTGGTCTTTTTCCTTTGGCTGTTTGTCCCCTCGTTGGGCAAAGACTTGCTAAGCTGTGAGACAGCTTCACCTGATGCCTCTGGCTACCATTGCATTGAAAATGTGGCACATAACCAATGTGCAACATTTGCACTCTTTTTCACAAACTCCTATTACTCCTCTCTCTCCAACCTCACCTCTTACTTGGGACTCAATAAGTTTGTGGTAGCACAAGCAAATGGATTCTCTGCAGACACTGAGTTCCTCTCCCAGAATCAACCCCTACTAATACCAATTCAGTGCCAGTGCATAGGTGGCTTCTCTCATGCTGAGCTAACCAAAACTACTATCAAAGGAGAGAGCTTCTATAACATAGCTCAATCACTAGAGGGCTTGACAACCTGCAAGGCTATTAGGGACAAAAACCCTGGTGTTTCACCTTGGAATCTTGATGACAAAGTCAGATTGATTATCCCGTTGAGATGTTCCTGCCCGTTTTCATCTCAAGTTAGACCACAACCAAAGCTTCTTCTCTCTTATCCTGTAACTGAAGGTGATACAATCTCCAATTTGGCCTCAAAGTTCAATATTAGTGAAGAAGTTATTGTTTCTGCCAATAACATATCATCTCAAGGCCTTAGGACTAGAAGTGGTCTTGCACCCTTTACGTCTATTCTCATTCCACTTAATGGTAAGCCTATCATTGGTCCTTTGGTTAAACCCAAGGAACCCAATTCTGGCTTTCAAACAACCAGCATCCCAGTAACAAGTCCACACAAGAAGTCACCAATGTGGAAGACTGAATTGTGCATTGGCCTAGCTGGGGTTGCACTTGGAGTCTGCATAGCTCTTGCTGCAGCCTTTTTCTTTATCAGATTGAAGCACAAGAATGGGGAAGAGAATTCATGCAAAGAAGGTGATATGGAGCTGCAACATCTGAATCAAAGTGTGAGAACCACCTCCACTAGTGACAAGAAGGTTTCGTTTGAGGGTTCTCAGGATACTATTGATGTGAAAATTGTTGATGTCACATCGCGCAAGATGCTGTTAGAGACATACACTATCGAGAATATGAGAAAAGCAACTGAAGATTTCAGCTCAAGCAATCACATTGAAGGATCAGTATATCACGGTCGTCTGAATGGGAAGAACATGGCAATCAAGAGAACAAAGGCAGAAACAGTGTCAAAGATAGATCTTGGCCTTTTTCATGATGCACTTCACCACCACCCCAACATACTTAGGCTTCTTGGAACGAGCATGTTAGAGGGGAAGGAGCAAGAAGAGTCATTTTTAGTTTTTGAGTATGCCAAAAATGGTTCATTGAAAGATTGGCTTCATGGTGGATTAGCCATTAAGAACCAATTCATTGCTTCCTGCTACTGTTTCTTGACATGGAGCCAAAGGCTGAGGATCTGCCTTGATGTGGCCAGTGCCTTGCAGTATATGCACCATGTTATGAATCCATGCTATGTGCATAGAAATATAAAGAGCAGGAAAATCTTTTTGGATGAAGAATTTGGTGCCAAGATAGGGAATTTTGGTATGGCTGGTTGTGTTGATCATGACACTGAGGATCCACATTTCTATTCCACCAACCCTGCCTCTTGGAGCCTTGGTTATTTGGCACCTGAGTATGTGCACCAAGGTATAATTTCCCCAAGCATTGATATCTTTGCTTATGGGGTGGTTTTGTTGGAAGTTTTATCTGGTCAAACTCCTATAAGCAGGCCCAATGAGAAGGGAGAAGGAAGCATTTGGCTAACAGATAAAATCAAGTCCATTTTGGGGTCTGAAAATGAGAATGAACTAAGGGGATGGATAGACAGTGCATTAGGGGAGAACTATTCATTCGATGCAGCTGTGACACTAGCCAACATTGCAAGAGCATGTGTGGAGGAAGATTCTTCTTCGAGACCAAGTGCAAGGGAAATTGTTGAGAAGCTATCAAGACTGGTGGAGGAATTACCCGAAGGGGAACATCACATGTTAATGAGTGAAAGCTCTAGCAAACCTCTGGTGAAGGCAGTGGAAAATAATGTTGAGTAA 2070 0.4275 MGTLEMIIAFHMKVLVFFLWLFVPSLGKDLLSCETASPDASGYHCIENVAHNQCATFALFFTNSYYSSLSNLTSYLGLNKFVVAQANGFSADTEFLSQNQPLLIPIQCQCIGGFSHAELTKTTIKGESFYNIAQSLEGLTTCKAIRDKNPGVSPWNLDDKVRLIIPLRCSCPFSSQVRPQPKLLLSYPVTEGDTISNLASKFNISEEVIVSANNISSQGLRTRSGLAPFTSILIPLNGKPIIGPLVKPKEPNSGFQTTSIPVTSPHKKSPMWKTELCIGLAGVALGVCIALAAAFFFIRLKHKNGEENSCKEGDMELQHLNQSVRTTSTSDKKVSFEGSQDTIDVKIVDVTSRKMLLETYTIENMRKATEDFSSSNHIEGSVYHGRLNGKNMAIKRTKAETVSKIDLGLFHDALHHHPNILRLLGTSMLEGKEQEESFLVFEYAKNGSLKDWLHGGLAIKNQFIASCYCFLTWSQRLRICLDVASALQYMHHVMNPCYVHRNIKSRKIFLDEEFGAKIGNFGMAGCVDHDTEDPHFYSTNPASWSLGYLAPEYVHQGIISPSIDIFAYGVVLLEVLSGQTPISRPNEKGEGSIWLTDKIKSILGSENENELRGWIDSALGENYSFDAAVTLANIARACVEEDSSSRPSAREIVEKLSRLVEELPEGEHHMLMSESSSKPLVKAVENNVE 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00368 689 SUPERFAMILY Protein kinase-like (PK-like) 354 656 IPR011009 -
Spst1g00368 689 Gene3D Transferase(Phosphotransferase) domain 1 444 677 - -
Spst1g00368 689 ProSiteProfiles LysM domain profile. 185 234 IPR018392 -
Spst1g00368 689 Gene3D Phosphorylase Kinase; domain 1 345 443 - -
Spst1g00368 689 SMART LysM_2 186 235 IPR018392 -
Spst1g00368 689 FunFam PTI1-like tyrosine-protein kinase 3 444 670 - -
Spst1g00368 689 ProSiteProfiles Protein kinase domain profile. 345 671 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst1g00368 689 MobiDBLite consensus disorder prediction 666 689 - -
Spst1g00368 689 CDD LysM 186 217 IPR018392 -
Spst1g00368 689 Pfam LysM domain 187 221 IPR018392 -
Spst1g00368 689 Gene3D LysM domain 185 235 IPR036779 -
Spst1g00368 689 Pfam Protein kinase domain 380 654 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst1g00368 689 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 25 663 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g00368 Spst-Chr1 4850048 4852117 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g00368 42 682 LysM Receptor-like Kinase (LYKs) Gene Family AT3G01840 40.923 5.19e-151 451
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Spst1g00368 Pkinase 1.8e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00368 - - gmx:100816082 1255.35