Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00356 ATGCTTCAAAGGTTGGGCTTGGAAAAAACAGAAGATATATATGTTTTCAAAGAAGGGATGGATCACGATAAGATAATTGGAAGCATTGGAGCTGTCTCTGCAGGACTAGATTTGGGAAAAGAAGGACCGTTGGTACATATAGGAAGCTGCATTGCTTCCTTACTAGGCCAGGGAGGCACTGACAATTACAAGATCAAATGGCATTGGCTCCGATATTTTAACAATGATCGTGACCGTCGGGATCTTATCACCTGTGGTTCTTCTTCAGGTGTTTGTGCAGCTTTCCGGGCTCCAGTGGGTGGAGTTCTCTTTGCTCTTGAAGAGGTGGCAACCTGGTGGAGAAGTGCTCTCCTATGGAGAACTTTTTTTAGCACAGCTGTGGTGGTGGTGGTTCTCAGGGCCTTCATTGAAATCTGCCATTCTGGAAAATGTGGCCTTTTTGGTGAAGGAGGTCTGATCATGTTTGATGTAAGCAATGTCACAGTGAAGTACCATGTGATGGATATTGTCATCGTTGTAGTCATTGGAATCATAGGCGGTGTATTGGGAAGTCTTTACAATCATGTGCTACACAAGATCCTCAGACTATATAATCTCATCAATCAGTAA 609 0.4368 MLQRLGLEKTEDIYVFKEGMDHDKIIGSIGAVSAGLDLGKEGPLVHIGSCIASLLGQGGTDNYKIKWHWLRYFNNDRDRRDLITCGSSSGVCAAFRAPVGGVLFALEEVATWWRSALLWRTFFSTAVVVVVLRAFIEICHSGKCGLFGEGGLIMFDVSNVTVKYHVMDIVIVVVIGIIGGVLGSLYNHVLHKILRLYNLINQ 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00356 202 Gene3D Clc chloride channel 23 201 - -
Spst1g00356 202 PRINTS Chloride channel signature 24 43 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Spst1g00356 202 PRINTS Chloride channel signature 88 107 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Spst1g00356 202 PRINTS Plant CLC chloride channel signature 109 117 IPR002251 GO:0005247|GO:0006821|GO:0016020
Spst1g00356 202 PRINTS Plant CLC chloride channel signature 123 133 IPR002251 GO:0005247|GO:0006821|GO:0016020
Spst1g00356 202 PRINTS Plant CLC chloride channel signature 141 148 IPR002251 GO:0005247|GO:0006821|GO:0016020
Spst1g00356 202 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 24 201 - -
Spst1g00356 202 SUPERFAMILY Clc chloride channel 24 200 IPR014743 -
Spst1g00356 202 Pfam Voltage gated chloride channel 24 198 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g00356 Spst-Chr1 4771732 4773136 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g00356 10 202 Ion Channels AT5G40890 81.865 3.74e-112 332
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00356 K05016 - gmx:100778395 345.125