Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00355 ATGTGCCAATATGGTCTCCCATTCTTAGCAAAATGCACCCCATGTGATTCATCAGTTCTAGAGTCGGCCTGCCCCACAAATGGAAGGTCCGGAAATTTCAAACAATTCAACTGCCCACCTGGCTTCTACAATGATCTAGCCACTCTGCTGCTTACCACTAATGATGATGCTGTTCGAAACATATTCTCAACCAACACCCCTCAAGAATATCAACCCATGTCCCTCCTAATTTTCTTTGTACTATATTGCATATTAGGACTAATTACTTTTGGAATTGCTGTGCCATCCGGGCTTTTCCTCCCAATTATTCTTATGGGCTCAGGTTATGGCCGCCTTCTTGGCATCTACATGGGACCTCATACAAACATTGACCAAGGGTTGTTTGCAGTACTTGGTGCAGCATCCCTCATGGCTGGTTCCATGAGGATGACGGTATCCCTTTGTGTGATCTTTCTTGAGCTCACAAACAATCTTCTACTGCTACCAATAACAATGATTGTTCTCCTCATAGCCAAAACTGTGGGAGACAGTTTCAACCCAAGTATCTATGAGATCATACTTCACTTGAAAGGCCTTCCTTTCATGGATGCAAATCCCGAGCCATGGATGAGAAATCTAACTGTGGGTGAGCTTGTTGATGTAAAGCCATCAGTGGTTACCCTCCGTGGAATAGAAAAGGTAGCCAAAATAGTAGATGTCTTGAAAAACACTGCACATAATGGTTTCCCTGTTATGGATGATGGGGTAGTACCGCCAGTAGTAGGACAGGCCAATGGAGCAACAGAACTGCATGGAGTAGTACTAAGAGCACATCTCATCCAAGCACTAAAGAAAAAGTGGTTCTTCAAAGAAAGAAGGAGAACAGAGGACAGGGAAGTGAGAGAGAAATTTACCTGGGTAGAGCTGGCTGAGAGAGAAGGAAGTATTGAAGGGGTGGCTGTGACCAGCGAGGAAATGGAGATGTTTGTTGATCTACACCCTCTTACAAATACAACCCCCTTTACGGTGCTAGAGAGCATGTCAGTAGCAAAAGCAATGATCCTCTTCAGGCAAGTTGGACTTCGTCATCTGCTTGTAGTACCCAAGTATCAAGCATCTGGGGTTTCCCCAGTAATTGGGATCTTGACCAGGCAAGATCTTCTGGCACACAACATTCTAGCAGTCTTTCCTCACCTGGCAAAATCTAAGAGCAGAGAAAAGAGGAATTGA 1209 0.4458 MCQYGLPFLAKCTPCDSSVLESACPTNGRSGNFKQFNCPPGFYNDLATLLLTTNDDAVRNIFSTNTPQEYQPMSLLIFFVLYCILGLITFGIAVPSGLFLPIILMGSGYGRLLGIYMGPHTNIDQGLFAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAKTVGDSFNPSIYEIILHLKGLPFMDANPEPWMRNLTVGELVDVKPSVVTLRGIEKVAKIVDVLKNTAHNGFPVMDDGVVPPVVGQANGATELHGVVLRAHLIQALKKKWFFKERRRTEDREVREKFTWVELAEREGSIEGVAVTSEEMEMFVDLHPLTNTTPFTVLESMSVAKAMILFRQVGLRHLLVVPKYQASGVSPVIGILTRQDLLAHNILAVFPHLAKSKSREKRN 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00355 402 ProSiteProfiles CBS domain profile. 329 395 IPR000644 -
Spst1g00355 402 CDD CBS_pair_voltage-gated_CLC_euk_bac 215 383 - -
Spst1g00355 402 Pfam Voltage gated chloride channel 50 175 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Spst1g00355 402 Gene3D Clc chloride channel 38 197 - -
Spst1g00355 402 PRINTS Chloride channel signature 126 142 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Spst1g00355 402 PRINTS Chloride channel signature 94 114 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Spst1g00355 402 PRINTS Chloride channel signature 182 196 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Spst1g00355 402 PRINTS Chloride channel signature 144 163 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Spst1g00355 402 SMART cbs_1 217 277 IPR000644 -
Spst1g00355 402 SMART cbs_1 332 385 IPR000644 -
Spst1g00355 402 SUPERFAMILY Clc chloride channel 49 197 IPR014743 -
Spst1g00355 402 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 1 387 - -
Spst1g00355 402 Pfam CBS domain 331 381 IPR000644 -
Spst1g00355 402 Gene3D - 198 388 IPR046342 -
Spst1g00355 402 SUPERFAMILY CBS-domain pair 199 382 IPR046342 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g00355 Spst-Chr1 4769891 4771276 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g00355 1 397 Ion Channels AT3G27170 77.330 0.0 618
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00355 K05016 - gmx:100788620 722.235