Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00350 ATGGGGGAGGATTCTAGGGAGTTTGGAGAAAGCACCAAAATCAACCACAAGATGGAAGAAGTTCAAAGAGAAGAAGAAATAGACCCAGAAAGCAATCCGCTGAATGAGCCACTGCTCAAGAGGAACTGGACACTGTCTTCCAACGCTCTTGCTCTGGTTGGAGAAAAAGTTTCCTTCATAGAAAGCTTGGATTATGAGATAAATGAGAATGATCTATTCAAGCATGACTGGAGAAGCAGGTCAAGAGTTCAAGTGTTGCAGTACATATTCTTGAAATGGTTATTAGCATTCCTTGTTGGACTTCTCACCGGTATTATAGCTACTCTTATCAATCTTGCTGTTGAGAATATTGCTGGGTACAAGCTTCTGGCTGTTCTCAGATACATCCACAAAGAAAGGTACTTGGCAGGTTTCCTATATTTCACGGGCATTAATTTCATTTTGACATTTGTTGCTGCTATTCTGTGCGTGTGTTTTGCTCCCACAGCAGCAGGACCTGGAATTCCTGAGATCAAAGCTTATCTTAATGGTGTTGATACTCCCAACATGTTTGGTGCTACAACATTGATTGTCAAGATAATTGGAAGCATTGGAGCTGTCTCTGCAGGACTAGATTTGGGAAAAGAAGGACCGTTGGTACATATAGGAAGCTGCATTGCTTCCTTACTAGGCCAGGGAGGCACTGACAATTACAAGATCAAATGGCATTGGCTCCGATATTTTAACAATGATCGTGACCGTCGGGATCTTATCACCTGTGGTTCTTCTTCAGGTGTTTGTGCAGCTTTCCGGGCTCCAGTGGGTGGAGTTCTCTTTGCTCTTGAAGAGGTGGCAACCTGGTGGAGAAGTGCTCTCCTATGGAGAACTTTTTTTAGCACAGCTGTGGTGGTGGTGGTTCTCAGGGCCTTCATTGAAATCTGCCATTCTGGAAAATGTGGCCTTTTTGGTGAAGGAGGTCTGATCATGTTTGATGTAAGCAATGTCACAGTGAAGTACCATGTGATGGATATTGTCATCGTTGTAGTCATTGGAATCATAGGCGGTGTATTGGGAAGTCTTTACAATCATGTGCTACACAAGATCCTCAGACTATATAATCTCATCAATCAGAAAGGAAAGATACATAAACTCCTCCTCAGTCTTGCAGTTTCACTGTTCACATCAATGTGCCAATATGGTCTCCCATTCTTAGCAAAATGCACCCCATGTGATTCATCAGTTCTAGAGTCGGCCTGCCCCACAAATGGAAGGTCCGGAAATTTCAAACAATTCAACTGCCCACCTGGCTTCTACAATGATCTAGCCACTCTGCTGCTTACCACTAATGATGATGCTGTTCGAAACATATTCTCAACCAACACCCCTCAAGAATATCAACCCATGTCCCTCCTAATTTTCTTTGTACTATATTGCATATTAGGACTAATTACTTTTGGAATTGCTGTGCCATCCGGGCTTTTCCTCCCAATTATTCTTATGGGCTCAGGTTATGGCCGCCTTCTTGGCATCTACATGGGACCTCATACAAACATTGACCAAGGGTTGTTTGCAGTACTTGGTGCAGCATCCCTCATGGCTGGTTCCATGAGGATGACGGTATCCCTTTGTGTGATCTTTCTTGAGCTCACAAACAATCTTCTACTGCTACCAATAACAATGATTGTTCTCCTCATAGCCAAAACTGTGGGAGACAGTTTCAACCCAAGTATCTATGAGATCATACTTCACTTGAAAGGCCTTCCTTTCATGGATGCAAATCCCGAGCCATGGATGAGAAATCTAACTGTGGGTGAGCTTGTTGATGTAAAGCCATCAGTGGTTACCCTCCGTGGAATAGAAAAGGTAGCCAAAATAGTAGATGTCTTGAAAAACACTGCACATAATGGTTTCCCTGTTATGGATGATGGGGTAGTACCGCCAGTAGTAGGACAGGCCAATGGAGCAACAGAACTGCATGGAGTAGTACTAAGAGCACATCTCATCCAAGCACTAAAGAAAAAGTGGTTCTTCAAAGAAAGAAGGAGAACAGAGGACAGGGAAGTGAGAGAGAAATTTACCTGGGTAGAGCTGGCTGAGAGAGAAGGAAGTATTGAAGGGGTGGCTGTGACCAGCGAGGAAATGGAGATGTTTGTTGATCTACACCCTCTTACAAATACAACCCCCTTTACGGTGCTAGAGAGCATGTCAGTAGCAAAAGCAATGATCCTCTTCAGGCAAGTTGGACTTCGTCATCTGCTTGTAGTACCCAAGTATCAAGCATCTGGGGTTTCCCCAGTAATTGGGATCTTGACCAGGCAAGATCTTCTGGCACACAACATTCTAGCAGTCTTTCCTCACCTGGCAAAATCTAAGAGCAGAGAAAAGAGGAATTGA 2373 0.4378 MGEDSREFGESTKINHKMEEVQREEEIDPESNPLNEPLLKRNWTLSSNALALVGEKVSFIESLDYEINENDLFKHDWRSRSRVQVLQYIFLKWLLAFLVGLLTGIIATLINLAVENIAGYKLLAVLRYIHKERYLAGFLYFTGINFILTFVAAILCVCFAPTAAGPGIPEIKAYLNGVDTPNMFGATTLIVKIIGSIGAVSAGLDLGKEGPLVHIGSCIASLLGQGGTDNYKIKWHWLRYFNNDRDRRDLITCGSSSGVCAAFRAPVGGVLFALEEVATWWRSALLWRTFFSTAVVVVVLRAFIEICHSGKCGLFGEGGLIMFDVSNVTVKYHVMDIVIVVVIGIIGGVLGSLYNHVLHKILRLYNLINQKGKIHKLLLSLAVSLFTSMCQYGLPFLAKCTPCDSSVLESACPTNGRSGNFKQFNCPPGFYNDLATLLLTTNDDAVRNIFSTNTPQEYQPMSLLIFFVLYCILGLITFGIAVPSGLFLPIILMGSGYGRLLGIYMGPHTNIDQGLFAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAKTVGDSFNPSIYEIILHLKGLPFMDANPEPWMRNLTVGELVDVKPSVVTLRGIEKVAKIVDVLKNTAHNGFPVMDDGVVPPVVGQANGATELHGVVLRAHLIQALKKKWFFKERRRTEDREVREKFTWVELAEREGSIEGVAVTSEEMEMFVDLHPLTNTTPFTVLESMSVAKAMILFRQVGLRHLLVVPKYQASGVSPVIGILTRQDLLAHNILAVFPHLAKSKSREKRN 790
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00350 790 CDD CBS_pair_voltage-gated_CLC_euk_bac 603 771 - -
Spst1g00350 790 SUPERFAMILY CBS-domain pair 587 770 IPR046342 -
Spst1g00350 790 CDD ClC_6_like 61 583 - -
Spst1g00350 790 Gene3D - 586 776 IPR046342 -
Spst1g00350 790 PRINTS Chloride channel signature 161 178 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Spst1g00350 790 PRINTS Chloride channel signature 192 211 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Spst1g00350 790 PRINTS Chloride channel signature 256 275 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Spst1g00350 790 PRINTS Chloride channel signature 482 502 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Spst1g00350 790 PRINTS Chloride channel signature 514 530 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Spst1g00350 790 PRINTS Chloride channel signature 532 551 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Spst1g00350 790 PRINTS Chloride channel signature 570 584 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Spst1g00350 790 SUPERFAMILY Clc chloride channel 70 585 IPR014743 -
Spst1g00350 790 SMART cbs_1 605 665 IPR000644 -
Spst1g00350 790 SMART cbs_1 720 773 IPR000644 -
Spst1g00350 790 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 24 775 - -
Spst1g00350 790 MobiDBLite consensus disorder prediction 1 33 - -
Spst1g00350 790 Pfam CBS domain 719 769 IPR000644 -
Spst1g00350 790 Pfam Voltage gated chloride channel 149 563 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Spst1g00350 790 Gene3D Clc chloride channel 83 585 - -
Spst1g00350 790 ProSiteProfiles CBS domain profile. 717 783 IPR000644 -
Spst1g00350 790 FunFam Chloride channel ClC3 84 404 - -
Spst1g00350 790 PRINTS Plant CLC chloride channel signature 277 285 IPR002251 GO:0005247|GO:0006821|GO:0016020
Spst1g00350 790 PRINTS Plant CLC chloride channel signature 291 301 IPR002251 GO:0005247|GO:0006821|GO:0016020
Spst1g00350 790 PRINTS Plant CLC chloride channel signature 309 316 IPR002251 GO:0005247|GO:0006821|GO:0016020
Spst1g00350 790 PRINTS Plant CLC chloride channel signature 434 450 IPR002251 GO:0005247|GO:0006821|GO:0016020
Spst1g00350 790 PRINTS Plant CLC chloride channel signature 66 74 IPR002251 GO:0005247|GO:0006821|GO:0016020
Spst1g00350 790 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g00350 Spst-Chr1 4751865 4756389 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g00350 3 784 Ion Channels AT3G27170 78.005 0.0 1236
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00350 K05016 - gmx:100788620 1452.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g00350 1 4751865 4756389 Spst1g00350 1 4751865 4756389 ECH
Spst1g00350 1 4751865 4756389 Spst4g00532 4 8355298 8359487 PCT