Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00339 ATGATGGAGCGCTACACGCTTCCCGCACCACCCAGTGAAGAGGACGCGCCACCACCGTCGTGGGCCAGGCTCAATTCACAAGAAGAGGACATCGCCATTGCCTTGGGTGCCCCTCTTCCCTTTAAATCCATGCTTCAACAACAATCTCAAACACAACAACAACAACAACAGCAACATCTTGACTCTTACTTCAACTTCAATATTAACTCTGCTATTTCCCTTCCCTTTGTTCCAAATATGGATTCTTTCCCCCCTCTAGACCCCTTTGCTCCTTCACTTTCATCACTTCCTTCCTTCAACAACAACAGCAGCATGCCCTTTGACCCGGGCTTTGAGTTGGGCCTGGACGCTGGGCTTCACTCTTCATGCCCCCCTCTCTTTTCCCAGGTGCAGACGGGTTTCGAGTTCGGAGAACTCGAAGCTCTAACTGGACCTGGGAATGCTCCGTTTTTGGACGGAGCAAAGATTGTGAGCCCTGTTGAGGGGGTGCAGCCGACTCTTTACAGGAAGAGGAGGGGAACGGCGGAAATTCCGGGACTGGAGACGGTGAGAAGGAAGGGGAGGAAGTGGGAGGAGGGTGAGGGTGAGGGTGAGGAAGGGAGCAGTGCTGACATGGATGGTTCCGGGTTGAATTACGAGTCTGATGAGAATGATAATGGGAATAATGCTTTGAAGGGAACTGAGAATGGTGGAGATCACAAGGGGAAGAGGAAGGGGCTGCCTGCTAAAAATCTCATGGCGGAGAGGCGCCGCAGGAAGAAGCTCAATGATAGGTTGTACATGCTCAGGTCTGTTGTGCCCAAGATTAGCAAGATGGATAGGGCTTCAATTCTTGGGGATGCAATTGACTACTTGAAGGAGTTATTGCAGCGGATTAATGATCTCCATAACGAGCTGGAGACAACACCGCTGCCACCATCTACTTCTACAAGCTTTCAGCCTCTAACACCTACCCTGCCAACCCTTCCCTGCCGGGTCAAGGAGGAACTGTATCCTGGCACCTTGCCTAGCCCCAAAAACCAAGCTGCAAAGGTTGAAGTTCGAGTAAGAGAAGGGAGAGCTTTCAATATTCACATGTTTTGCACCCGCCGACCAGGCCTTTTGCTTTCTACCATGAGGGCTTTGGATAACCTTGGATTGGATGTACAGCAGGCTGTTATTAGCTGTTTTAACGGCTTTGCTTTAGATGTGTTTAAAGCTGAGCAATGCAGAGAAGGCCAGGATGTCCTTCCTGAGCAAATTAAAGCAGTTCTCTTGGATTCAGCAGGCTTCCAAGGTATGATGTGA 1287 0.5027 MMERYTLPAPPSEEDAPPPSWARLNSQEEDIAIALGAPLPFKSMLQQQSQTQQQQQQQHLDSYFNFNINSAISLPFVPNMDSFPPLDPFAPSLSSLPSFNNNSSMPFDPGFELGLDAGLHSSCPPLFSQVQTGFEFGELEALTGPGNAPFLDGAKIVSPVEGVQPTLYRKRRGTAEIPGLETVRRKGRKWEEGEGEGEEGSSADMDGSGLNYESDENDNGNNALKGTENGGDHKGKRKGLPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIDYLKELLQRINDLHNELETTPLPPSTSTSFQPLTPTLPTLPCRVKEELYPGTLPSPKNQAAKVEVRVREGRAFNIHMFCTRRPGLLLSTMRALDNLGLDVQQAVISCFNGFALDVFKAEQCREGQDVLPEQIKAVLLDSAGFQGMM 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00339 428 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 239 288 IPR011598 GO:0046983
Spst1g00339 428 MobiDBLite consensus disorder prediction 179 196 - -
Spst1g00339 428 CDD ACT_UUR-ACR-like 357 398 - -
Spst1g00339 428 Pfam Helix-loop-helix DNA-binding domain 246 288 IPR011598 GO:0046983
Spst1g00339 428 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 59 424 - -
Spst1g00339 428 Gene3D - 233 302 IPR036638 GO:0046983
Spst1g00339 428 MobiDBLite consensus disorder prediction 1 22 - -
Spst1g00339 428 MobiDBLite consensus disorder prediction 179 250 - -
Spst1g00339 428 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 242 307 IPR036638 GO:0046983
Spst1g00339 428 MobiDBLite consensus disorder prediction 229 250 - -
Spst1g00339 428 FunFam BHLH transcription factor 235 303 - -
Spst1g00339 428 MobiDBLite consensus disorder prediction 212 226 - -
Spst1g00339 428 SMART finulus 245 294 IPR011598 GO:0046983
Spst1g00339 428 CDD bHLH_AtAMS_like 242 303 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g00339 Spst-Chr1 4683736 4687454 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g00339 138 401 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 65.455 4.85e-105 318
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Spst1g00339 HLH 1.2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00339 - - vun:114162308 625.935