Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00332 ATGGCGAACAAGTACTGGACAGTGTCTCTTCCCGTTCACAACTCCGCATCTCAACTCTGGAACCAAATTCAGGAAGGAATCTCCAAACATTCCTTCGATACTCCTCTCTACAGATTCAACATCCCTAACCTCCGCGTCGGAACCCTAGATTCTCTCCTCTCTCTCAGCGATGACCTTGCCAAGTCGAACAATTTCGTTGAAGGAGTGACGCACAAGATCAGGCGCCAGATTGAGGAGCTTCAGAGAGTTTCCGGCGTGGACAGCGGCGGTCTCACCGTAGACGGCGTCCCCGTGGATTCCTACTTGACCAGGTTTGTTTGGGATGAGGCCAAGTACCCCACCATGTCGCCTTTGAAGGAGATTGTGGATGGCATTCACAGTCAAGTGGCAAAGATTGAGGATGATCTCAAGGTTCGTGTTTCTGAGTACAATAATATCCGTAGTCAGCTTAATGCTATCAACCGAAAGCAAACTGGAAGCTTAGCAGTCCGTGATCTTTCCAACCTGGTAAAACCTGAGGACATCATAACTTCAGAGCATTTAATTACCCTCCTTGCAATTGTTTCCAAGTATTCACAGAAGGATTGGCTTTCAAGCTACGAAACATTGACAGTTTATGTCCCCAGGTCTTCTAAGAAGTTGTATGAAGACAACGAATATGCTCTTTATACTGTAACACTCTTCAGTCGTGTTGCAGATAATTTTAGAACTAGTGCGCGAGAAAAAGGGTTCCAAATTCGTGACTTTGAATACAGTCAAGAAACACACGAAAACCGAAAGCAAGAGTTAGATAAATTGGTTGAAGATCAGGAAAGATTGAGGGCTTCTCTGTTGCAATGGTGCTTTACCAGTTATGGAGAGGTTTTCAGTTCCTGGATGCACTTTTGTGCTGTGCGTTTATTTGCTGAGAGCATTCTGAGATATGGTCTGCCACCGTCTTTCTTGGCATGCGTTTTAGCTCCTTCTGTAAAATCTGAGAAGAAAGTACGGTCTATCCTTGAAGGTTTGAGTGATAGTACAAACAGGCAAGTGGCTTATCAATGTGCATACTGGAAGATTGAGGATGAAGTTGGTACTGGGATGGTTGGGCTTGCAGGTGATTCCGATGCCCACCCATATGTTTCTTTCACTATCAATCTTGCTTGA 1146 0.4494 MANKYWTVSLPVHNSASQLWNQIQEGISKHSFDTPLYRFNIPNLRVGTLDSLLSLSDDLAKSNNFVEGVTHKIRRQIEELQRVSGVDSGGLTVDGVPVDSYLTRFVWDEAKYPTMSPLKEIVDGIHSQVAKIEDDLKVRVSEYNNIRSQLNAINRKQTGSLAVRDLSNLVKPEDIITSEHLITLLAIVSKYSQKDWLSSYETLTVYVPRSSKKLYEDNEYALYTVTLFSRVADNFRTSAREKGFQIRDFEYSQETHENRKQELDKLVEDQERLRASLLQWCFTSYGEVFSSWMHFCAVRLFAESILRYGLPPSFLACVLAPSVKSEKKVRSILEGLSDSTNRQVAYQCAYWKIEDEVGTGMVGLAGDSDAHPYVSFTINLA 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00332 381 Gene3D - 163 250 - -
Spst1g00332 381 Coils Coil 253 276 - -
Spst1g00332 381 CDD V-ATPase_C 5 378 IPR004907 GO:0033180|GO:0046961|GO:1902600
Spst1g00332 381 Gene3D - 41 311 - -
Spst1g00332 381 PANTHER V-TYPE PROTON ATPASE SUBUNIT C 1 380 IPR004907 GO:0033180|GO:0046961|GO:1902600
Spst1g00332 381 FunFam V-type proton ATPase subunit C 163 250 - -
Spst1g00332 381 Pfam V-ATPase subunit C 5 374 IPR004907 GO:0033180|GO:0046961|GO:1902600
Spst1g00332 381 Gene3D Vacuolar atp synthase subunit c; domain 1 8 333 - -
Spst1g00332 381 SUPERFAMILY Vacuolar ATP synthase subunit C 1 380 IPR036132 GO:0015078|GO:0033180|GO:1902600
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g00332 Spst-Chr1 4585007 4589685 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g00332 1 381 Primary Pumps ATPases(2) AT1G12840 80.105 0.0 636
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00332 K02148 - gmx:100813963 684.1