Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00331 ATGATGGATCAGCGACAGCGAGAGAAGCTGCTTCACAAAACCGAGGCCTGTGCTTCCGTGGCAGGTGTTGATGCCGAGCTTCGATTTGTTACCACCCCAGGGAACATCACCAACACCAACAACGATACCGGGATCTTCAACAACAACGGCAGCAGCAGCAGCGTACCTCAAACTCACGGGTCGGGTCGGATCCACGACGCTAATGACCTTGGTCTCGTCGCTGCGGTTACCACCCTCGGAACTGTGAACAGGAAGAAGAGAATGCCCAGGCAACGAAGATCCACCACCAACCCCAACCCCAACTTGTTTATGCACATGAACCACTTCAACAACCCTTTCTCCTCCAACCAGCAACAGGCTACTTTTCCATCTTCAACTCCTTCCTCGTCCTCGCACGTGCCACCCTCCTCCGCCACTCCTCCTCCTCCTCCTCCCCCTCCCCCTCCCCCTCCCCAGGCAGCACGTGAAATTGATAATAGAGGCTTGAGATTCCTTTTCCAGAAGGAACTGAAGAACAGTGATGTTAGCTCCCTAAGGAGAATGGTATTGCCAAAGAAAGCTGCTGAGACTTTCCTGCCATCATTGGAATCAAAAGAGGGAATTCTAATCAACATGGATGACAAAGATGGCATCCATGTCTGGAACTTCAAGTACAGGTTTTGGCCTAATAACAACAGCCGTATGTACGTACTTGAAAACACAGGAGACTTTGTCAGCACACATGGCCTTCGATCTGGCGATACCATTATGATTTACCAATACTTTGAAAACAATAACTATGTTATCCAGGCTAAAAGGGGTTCGGATCAGGATGAATTTATGGAACAAACTAATGATACTGTCAATGACATCTTCGGCAGTGACTTGGAGGCGAACAAACCCGAATCTTGTTTTAACATACCCTATGAGGTTAATAATTCTGGCATGTCATTCATATATGACACTTCTTTCTCAAATGACTCGCCACTTGACTTTTTGGGTGGATCAATGACCAATTTGCCGAGGATTGGACCATCTGAAACATTCGGGTCGGTCGACAATTTGTCGCTTGATGAATTCTATTAA 1065 0.4751 MMDQRQREKLLHKTEACASVAGVDAELRFVTTPGNITNTNNDTGIFNNNGSSSSVPQTHGSGRIHDANDLGLVAAVTTLGTVNRKKRMPRQRRSTTNPNPNLFMHMNHFNNPFSSNQQQATFPSSTPSSSSHVPPSSATPPPPPPPPPPPPQAAREIDNRGLRFLFQKELKNSDVSSLRRMVLPKKAAETFLPSLESKEGILINMDDKDGIHVWNFKYRFWPNNNSRMYVLENTGDFVSTHGLRSGDTIMIYQYFENNNYVIQAKRGSDQDEFMEQTNDTVNDIFGSDLEANKPESCFNIPYEVNNSGMSFIYDTSFSNDSPLDFLGGSMTNLPRIGPSETFGSVDNLSLDEFY 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00331 354 SUPERFAMILY DNA-binding pseudobarrel domain 164 261 IPR015300 -
Spst1g00331 354 Pfam B3 DNA binding domain 166 265 IPR003340 GO:0003677
Spst1g00331 354 SUPERFAMILY Formin homology 2 domain (FH2 domain) 141 151 - -
Spst1g00331 354 MobiDBLite consensus disorder prediction 93 133 - -
Spst1g00331 354 MobiDBLite consensus disorder prediction 40 65 - -
Spst1g00331 354 Gene3D - 162 281 IPR015300 -
Spst1g00331 354 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 82 287 IPR044800 GO:0003700
Spst1g00331 354 MobiDBLite consensus disorder prediction 134 154 - -
Spst1g00331 354 MobiDBLite consensus disorder prediction 81 155 - -
Spst1g00331 354 CDD B3_DNA 164 266 IPR003340 GO:0003677
Spst1g00331 354 MobiDBLite consensus disorder prediction 40 61 - -
Spst1g00331 354 ProSiteProfiles B3 DNA-binding domain profile. 166 268 IPR003340 GO:0003677
Spst1g00331 354 SMART B3_2 166 268 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g00331 Spst-Chr1 4574872 4577932 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g00331 53 354 B3 DNA Binding Superfamily AT3G26790 45.672 2.74e-80 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Spst1g00331 B3 2.6e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00331 K09287 - gmx:100783961 418.698