Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00323 ATGGGGCGGTGGAGAAAGTGGAATGGGGCGGCCCAGTGTGGAAGTGGGCCAGAAGGAAGAAGAGAGACGCTCGCCCCGAGCAAGGTTTCTCGAAAACAAAAGCGCATGGAAAGAGGGAAGATTGCGTCTCCACCTTCCCCATGCTTATCATGTGCTCCTCCCCTCACTAACACTTCACAACACAACCCTTCTCTTCTCTCTCACACACCAACCACCATGTTGCCCTGCGATTACTGCCACTCCAAACCCGCCTTACTCTTCTGCAGACCCGACTCCGCCAAACTCTGTCTCCTCTGCGACCACCACGTCCATGCTGCCAACGCCCTCTCCCTCAAGCACCTCCGCTTCCAGATTTGCGAAACCTGCAACGCCGACAACGCCGCCGTCAGCTGCTCCTCCCACAACCTCCTCCTCTGCCACAGCTGCGACCTCGACGCGCACGCCCCCGCCCCCGCCTCCCTCCACCATCGCCACCGCCTCCGCGGTCTCTCCGGCTGCCCCTCCGTCCCCGAGATTGCCTCCACCCTCGGCCTCGATCTCCGGCGCCGCCATGCCAAGTGCCGCCACGAGGTCTACGAGCAGGTCCTCGAAGTCGCACGCACGAGGAACGAGGGCGAGTTTGCTCCTGCTGAAAGCTTGGAACTCAGGTTCGACTCCGAAAACGACGTTGTCGATGAGATGCTGCTGCAGCAGACGCCATTCACGTCCTTGCTCGGGATGTCCGATTCTCAATCTGAATTTGACGCCGCCAAAAGTAACAATAACGGCTACGGAGCCCAAGAAGGAGATCTTCTCTGGAGTTTTGATCCCAACTATCAGCCTCCTCAGGTGTGGGATTTTCAATTACAGAAATCAAGAGATTGTGATGAACCAAGACTGGTGACATTTGATGGTCTAGAAGTTCCAAAATCATTTCAGGATGTACACAATATGAATTACTCGACCATCGGTGATGATATTTTATCAAGAAATAACCAATCGGATCAGTCATCATCAAGCCACGCAAAGAAGAAAGAAGAAAGCAACAAGAAAGCTAGAGGTGGGTTATCATCAGAGTCGAAACTGTTAGAATCCATACCTTACAGTGCCACCAACAATGTCGTAGTCATGGAACATCTTGTGGGTGGGAATGACAATGTCAGCACCTTAAAAGCCAGGGTGAGCTTGGAAGAGTTGGCTAAGAATAGAGGTGATGCAATGTTACGCTACAAGGAGAAGAAGAAAACTCGACGGTACGATAAGCACATTCGGTATGAATCAAGAAAGGCCAGGGCTGATACTAGAAAAAGGGTGAGAGGGAGATTTGTGAAGGCAAGTGATGTTGAAGCATGA 1332 0.5263 MGRWRKWNGAAQCGSGPEGRRETLAPSKVSRKQKRMERGKIASPPSPCLSCAPPLTNTSQHNPSLLSHTPTTMLPCDYCHSKPALLFCRPDSAKLCLLCDHHVHAANALSLKHLRFQICETCNADNAAVSCSSHNLLLCHSCDLDAHAPAPASLHHRHRLRGLSGCPSVPEIASTLGLDLRRRHAKCRHEVYEQVLEVARTRNEGEFAPAESLELRFDSENDVVDEMLLQQTPFTSLLGMSDSQSEFDAAKSNNNGYGAQEGDLLWSFDPNYQPPQVWDFQLQKSRDCDEPRLVTFDGLEVPKSFQDVHNMNYSTIGDDILSRNNQSDQSSSSHAKKKEESNKKARGGLSSESKLLESIPYSATNNVVVMEHLVGGNDNVSTLKARVSLEELAKNRGDAMLRYKEKKKTRRYDKHIRYESRKARADTRKRVRGRFVKASDVEA 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00323 443 CDD Bbox1_BBX-like 75 118 - -
Spst1g00323 443 MobiDBLite consensus disorder prediction 317 331 - -
Spst1g00323 443 MobiDBLite consensus disorder prediction 1 47 - -
Spst1g00323 443 ProSiteProfiles Zinc finger B-box type profile. 71 118 IPR000315 GO:0008270
Spst1g00323 443 MobiDBLite consensus disorder prediction 24 39 - -
Spst1g00323 443 SMART bboxneu5 71 118 IPR000315 GO:0008270
Spst1g00323 443 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 75 439 - -
Spst1g00323 443 MobiDBLite consensus disorder prediction 317 351 - -
Spst1g00323 443 MobiDBLite consensus disorder prediction 332 347 - -
Spst1g00323 443 ProSiteProfiles CCT domain profile. 396 438 IPR010402 GO:0005515
Spst1g00323 443 ProSiteProfiles Zinc finger B-box type profile. 114 163 IPR000315 GO:0008270
Spst1g00323 443 Pfam CCT motif 396 438 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g00323 Spst-Chr1 4505806 4509547 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g00323 69 440 C2C2-CO-like Transcription Factor Family AT2G33500 33.174 5.24e-61 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Spst1g00323 CCT 1.1e-15 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00323 - - vum:124830018 588.186