Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Spst1g00318 | ATGGCAGACCCAACAGCCATGTATGAGTTCCTGAAGCAGCCCTCAAACGGTGCTGCAAAGAGACCCCTACCGCCACCACCACACTCCACCACTGCCAACACCACCACCACCACCACCGCCACCGCCACCACCCGCACCTTCCAATGCCACTTCTGCCACCGAGTGTTCTACACCTCGCAAGCTCTTGGGGGCCACCAAAACGCCCACAAACTGGAGCGAGCTGCCGCGAGGAGACAAACCAATGGGCTTCTCCCGCCGCCCCCGCTGCCTCTGGAGCCCGCCCTCAAGCCCACCGAGGCCAGGCCCAGGCCCATGCTGGAACCACTGGAGCCCGCCACCGGACTCTTCTTCCACCCTCCCTACTGGCTCGATGTAGAGCCCTTGCAGTTCCAAACCACCCACCCTTACGTCACAGCCGCCACCCTCCCCGTTCCGTTCCACGCTGCGTCTTCCACAGCACCTCAACAACAACAAGTCCTCTCCCACAATGTCGACGCTTCTGACCACGTCAACCTCGACCTCACTCTCCGCTTGTGA | 537 | 0.622 | MADPTAMYEFLKQPSNGAAKRPLPPPPHSTTANTTTTTTATATTRTFQCHFCHRVFYTSQALGGHQNAHKLERAAARRQTNGLLPPPPLPLEPALKPTEARPRPMLEPLEPATGLFFHPPYWLDVEPLQFQTTHPYVTAATLPVPFHAASSTAPQQQQVLSHNVDASDHVNLDLTLRL | 178 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Spst1g00318 | 178 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 47 | 74 | IPR013087 | - | |
Spst1g00318 | 178 | MobiDBLite | consensus disorder prediction | 12 | 39 | - | - | |
Spst1g00318 | 178 | SUPERFAMILY | beta-beta-alpha zinc fingers | 44 | 74 | IPR036236 | - | |
Spst1g00318 | 178 | Gene3D | Classic Zinc Finger | 28 | 83 | - | - | |
Spst1g00318 | 178 | PANTHER | C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN | 30 | 81 | IPR044246 | GO:0009788 | |
Spst1g00318 | 178 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 49 | 69 | IPR013087 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Spst1g00318 | Spst-Chr1 | 4422225 | 4422761 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Spst1g00318 | 42 | 89 | C2H2 Transcription Factor Family | AT5G14010 | 64.583 | 4.70e-14 | 64.7 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Spst1g00318 | None | None | None |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Spst1g00318 | - | - | vra:106758350 | 290.426 |