Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00318 ATGGCAGACCCAACAGCCATGTATGAGTTCCTGAAGCAGCCCTCAAACGGTGCTGCAAAGAGACCCCTACCGCCACCACCACACTCCACCACTGCCAACACCACCACCACCACCACCGCCACCGCCACCACCCGCACCTTCCAATGCCACTTCTGCCACCGAGTGTTCTACACCTCGCAAGCTCTTGGGGGCCACCAAAACGCCCACAAACTGGAGCGAGCTGCCGCGAGGAGACAAACCAATGGGCTTCTCCCGCCGCCCCCGCTGCCTCTGGAGCCCGCCCTCAAGCCCACCGAGGCCAGGCCCAGGCCCATGCTGGAACCACTGGAGCCCGCCACCGGACTCTTCTTCCACCCTCCCTACTGGCTCGATGTAGAGCCCTTGCAGTTCCAAACCACCCACCCTTACGTCACAGCCGCCACCCTCCCCGTTCCGTTCCACGCTGCGTCTTCCACAGCACCTCAACAACAACAAGTCCTCTCCCACAATGTCGACGCTTCTGACCACGTCAACCTCGACCTCACTCTCCGCTTGTGA 537 0.622 MADPTAMYEFLKQPSNGAAKRPLPPPPHSTTANTTTTTTATATTRTFQCHFCHRVFYTSQALGGHQNAHKLERAAARRQTNGLLPPPPLPLEPALKPTEARPRPMLEPLEPATGLFFHPPYWLDVEPLQFQTTHPYVTAATLPVPFHAASSTAPQQQQVLSHNVDASDHVNLDLTLRL 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00318 178 ProSiteProfiles Zinc finger C2H2 type domain profile. 47 74 IPR013087 -
Spst1g00318 178 MobiDBLite consensus disorder prediction 12 39 - -
Spst1g00318 178 SUPERFAMILY beta-beta-alpha zinc fingers 44 74 IPR036236 -
Spst1g00318 178 Gene3D Classic Zinc Finger 28 83 - -
Spst1g00318 178 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 30 81 IPR044246 GO:0009788
Spst1g00318 178 ProSitePatterns Zinc finger C2H2 type domain signature. 49 69 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g00318 Spst-Chr1 4422225 4422761 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g00318 42 89 C2H2 Transcription Factor Family AT5G14010 64.583 4.70e-14 64.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Spst1g00318 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00318 - - vra:106758350 290.426