Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00312 ATGGAAGTGTTAAACCCAGTGGAAGGTAAGACCTTTAGGCTCCCGGTTGGGTACAGGTTCGACCCCACTGATGAAATTCTTGCTGGTTACTACCTCAGGAAGAGGATCATGGCACAGCCACTTCCTAATGACCTCATCCAAGACTGTGATGTTCACCAGACTGAGCCTTGGGAGCTTCCAGGAGGTGGGAAGTACATGAATTGGCAGAGGTTTTTCTTCTATGATGTCAGGACCCATGTGTTTGAAAACTCTGACAAGAGAGATGCTGGGAAAGGCGAATGGAGAGCAGTGGAGAAAGATGAAGAGGTTGAGTTTCCTGGCGAACAATTCATAGCAAAGAGGAACATTCTGGTTTTCTGGAAAGCCAGGGGCAACTCTCTTGCCAAAACCAACTGGGTGATGCATGAGTTTCGTCTTGCCCTAAAGTCACATCCATCAATGATGTCAGCTATGGCTGTGTGCCGCATATTCGAGACAAAGGGCTCAAAGAAGGGAAAGAAGGCAAAATCTGAAGGGGTGGCCTCTAACAGGAGCAATGTTGAAGAAGCTATGGTTGTCACACCCACTGTCATTGATTTCAGTGTGGAGGGTGGCATGGAGGCTGGTCCTCCCGCACCGGGGACCCCCTGA 630 0.4937 MEVLNPVEGKTFRLPVGYRFDPTDEILAGYYLRKRIMAQPLPNDLIQDCDVHQTEPWELPGGGKYMNWQRFFFYDVRTHVFENSDKRDAGKGEWRAVEKDEEVEFPGEQFIAKRNILVFWKARGNSLAKTNWVMHEFRLALKSHPSMMSAMAVCRIFETKGSKKGKKAKSEGVASNRSNVEEAMVVTPTVIDFSVEGGMEAGPPAPGTP 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00312 209 ProSiteProfiles NAC domain profile. 14 159 IPR003441 GO:0003677|GO:0006355
Spst1g00312 209 Gene3D NAC domain 23 164 IPR036093 GO:0003677|GO:0006355
Spst1g00312 209 PANTHER NAC TRANSCRIPTION FACTOR 56 14 167 - -
Spst1g00312 209 Pfam No apical meristem (NAM) protein 15 139 IPR003441 GO:0003677|GO:0006355
Spst1g00312 209 SUPERFAMILY NAC domain 11 158 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g00312 Spst-Chr1 4334463 4335843 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g00312 1 160 NAC Transcription Factor Family AT5G13180 35.152 8.51e-27 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Spst1g00312 NAM 6.3e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00312 - - vum:124846897 312.383
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g00312 1 4334463 4335843 Spst4g00616 4 13949730 13951936 PCT