Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00303 ATGGGTAGCTGTCCTTGTTTCGGGTTGAAGAAGAAGAGCAACGTGAAGAGCGCCAAGGCGCGGGACGAGGAAAACAAGAATCGCAAATCTGCAGAGAGTAGCAATGATGTGTCTGAATGTTGTTCAGGAAATGGACCAGAAGAAAACCCAAAAGAGGATGGCGAAAGTCCTCATAAGGCTCGGATATTTACCTTCCGAGAGCTTGCAACAGCAACAAAAAATTTTAGGGATGAAACCTTTATTGGGCAAGGTGGATTTGGCATTGTTTACAAGGGAATAATCGGGGAAAATCAGGTTGTAGCTGTTAAAAGACTTGATACTACTGGTGTCCAAGGAGAGAAAGAATTTCTGGTGGAAGTTCTCATGCTTTCCCTTTTACGGCATTCCAACCTTGTTAATATGATTGGTTACTGTGCTGAAGGGGATCAACGGCTTCTTGTGTATGAGTACATGGCTTTGGGTTCCCTAGAATCTCATCTTCATGATGTTTCTCCTGATGAAGAAGCACTTGATTGGAATACCAGAATGATGATAGCTTGTGGGTCAGCAAAAGGACTACGTTATCTGCACGATGAAGCAAAGCCCTCTGTGATATACAGGGATCTTAAAACATCCAACATTCTCTTGGGTGAAGATTTCCATCCAAAACTTTCTGATTTCGGGCTTGCAAAATTTGGTCCAACCGGAGATCAATCATATGTTGCCACTAGGGTCATGGGAACCCAAGGCTACTGTGCCCCTGAATATGCCACTAGTGGAAAATTAACGATGAGATCTGACATTTACAGTTTTGGGGTTGTGTTATTGGAACTAATTACTGGACGCAAAGCATACGATGATAACCGTGGCCCTGAAAAGCATCTGGTAGACTGGGCACGTCCAATGCTTAGAGAAAAAAGGAGTTTCGGAAGATTGGTAGACCCACGGCTTCGAGGCCAGTACCCAGGATCTTGTCTACCGATGGTCATTGAATTGACAACCATGTGCCTTCGTGAAGAGCCACGTCAACGGCCTAAGGCAGGTGATATAGTGGAAGCTCTGGAATTCTTGTCATCCAAGCAATACTCCCCAAACGTATTCAACACAGTCAACACAACTGAGGTGGAGAGTGGAGCGTCCCCAAATGAAACGACAGCGATTTTGCCTAAAGAATCAACCAGAGAGAGAGCTGTTGCAGAAGCCAAGCTGTGGGGGGAGACATGGAGGCAGAGACGACTAAGTGAGCAAAGTAGTCCTGAGGAAGCATATAAGTTGTGA 1257 0.4519 MGSCPCFGLKKKSNVKSAKARDEENKNRKSAESSNDVSECCSGNGPEENPKEDGESPHKARIFTFRELATATKNFRDETFIGQGGFGIVYKGIIGENQVVAVKRLDTTGVQGEKEFLVEVLMLSLLRHSNLVNMIGYCAEGDQRLLVYEYMALGSLESHLHDVSPDEEALDWNTRMMIACGSAKGLRYLHDEAKPSVIYRDLKTSNILLGEDFHPKLSDFGLAKFGPTGDQSYVATRVMGTQGYCAPEYATSGKLTMRSDIYSFGVVLLELITGRKAYDDNRGPEKHLVDWARPMLREKRSFGRLVDPRLRGQYPGSCLPMVIELTTMCLREEPRQRPKAGDIVEALEFLSSKQYSPNVFNTVNTTEVESGASPNETTAILPKESTRERAVAEAKLWGETWRQRRLSEQSSPEEAYKL 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00303 418 Gene3D Transferase(Phosphotransferase) domain 1 151 369 - -
Spst1g00303 418 MobiDBLite consensus disorder prediction 13 58 - -
Spst1g00303 418 FunFam probable serine/threonine-protein kinase RLCKVII 47 150 - -
Spst1g00303 418 CDD STKc_IRAK 81 348 - -
Spst1g00303 418 SUPERFAMILY Protein kinase-like (PK-like) 55 350 IPR011009 -
Spst1g00303 418 PANTHER OS07G0668900 PROTEIN 23 358 - -
Spst1g00303 418 ProSitePatterns Serine/Threonine protein kinases active-site signature. 197 209 IPR008271 GO:0004672|GO:0006468
Spst1g00303 418 FunFam Serine/threonine-protein kinase PBS1 151 366 - -
Spst1g00303 418 SMART serkin_6 75 350 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst1g00303 418 Gene3D Phosphorylase Kinase; domain 1 47 150 - -
Spst1g00303 418 ProSitePatterns Protein kinases ATP-binding region signature. 81 103 IPR017441 GO:0005524
Spst1g00303 418 Pfam Protein kinase domain 76 345 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst1g00303 418 ProSiteProfiles Protein kinase domain profile. 75 350 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst1g00303 418 MobiDBLite consensus disorder prediction 15 33 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g00303 Spst-Chr1 4253708 4258047 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g00303 1 402 Glycoside Hydrolase AT3G07070 50.242 2.43e-134 390
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Spst1g00303 Pkinase 1.9e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00303 K13430 - gmx:100805675 669.077