Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00294 ATGCCGCCGAAGAAAGAAAAGGGTTGGAGACAAGCACTCGATTCCTTTGGCAAATCCAAAGGAGTAGGACGGCCCTCCGATGTTGTATCCGACGACGCTGCCTATGTCGCTTTTCTTGTCGCTTTTCATGACGTCAAGAAGAAAATGATCAATTCACTTTGTGGAACTCTCAAGAGTGAGAACAACTCTAGAACCAAACACCAACCCACTTCTTCAAATGACTCAGTTTTGCAATCAAAGAAAAATGCCACTCAATCCTCTGGTGATCTAGACCAAACTAGCCTAACCCCACCCAGCTTAAACCTTCCTGCACTCAAATTTGACTTGGATGGAGATGTGGAAGTTCAGTCACCAGATAGTTCAATGTGGGAATCCTTTTTCGCTGACCACTTAGATGCTGATTTCATGATCTCTTCCCCGGTGAGGAACGTCCCCTCCCCACATGCCTCTTCCTACAATTGCAACTATAGCTATGCTCAGGGAATGCAAGGTCAGAGTCTATCAGGGTGTTCCCCACCAAGGTTTTCTTCATCCCATGTTGGAGCCTTCAACAGCAGCCACAAAGGGAAAGGACTTAGTCCTCTCCACAGGGTGTTCAACTCACCAAACAATCAGTACATGCAGCATGTTGAAAACCTTTCACTTCCTGCAATAGAAGAGTTCTTGGAGGACTATCAAGGGTATTCATCAACCAAGGTTTCTTCTGATATTGCAAGTTCATCTGAATGCTTTGACTTGTCTACTCAAATCCCATCATCCATATTGGATAGCTTGACACTGCCCAATTCCTCAAGGTACCATGGATCAGTCGATGAAGAATCCTCAGTGCACGGTGGTGGCTCTTCCCAACTGTCCCAAGAGAGTGACATCTATCATCAGATGGGGTCCATGGCTAGTGCATCCCTCTCACAGGCTCTACAACAAGAACGCTACCAAGAGAAACGGCAAAAGCAGCAAGCACAACAACTACAGCAACAACAGCGCCAGCAAGAGAATCTGATGGTGCCTATTCCAATCGGAATCGAGCAGGATCAAGACAGCGGGCTTCAACTGGTGCACCTGCTTCTGGCATGTGCAGAGGCAGTGGCCAAAGAGGAATACATGCTAGCAAGAAGGTACCTTCACCACCTAAACCGAGTCGTTACCCCCTTAGGCGATTCCATGCAGCGTGTCGCGGCGTGCTTCACCGACTCGCTCAGCGCCAGGCTCAACGCCACCCTCACCGCGAAACCCTCCAAACAACTCACCCCCTCAAACTCCATGGAAGTCCTCAAAATCTACCAGATCGTGTACCAGGCTTGCCCCTACGTCAAGTTCGCTCATTTCACCGCCAACCAGGCCATCTTCGAAGCTTTCGAGACGGAAGAGCGCGTCCACATCATCGACCTCGACATTCTCCAGGGCTACCAGTGGCCCGCCTTCATGCAGGCCCTCGCAGCCCGCCCCGCCGCCGCCCCATTCCTCCGCATCACCGGCGTCGGCCCCTGCCTCGACGCCGTCCGCGAAACTGGCCGCTGCCTGACCGAGCTCGCCCACTCCCTCCGCATCCCCTTCGAATTCCACGCCGTCGGAGAACAGCTCGAGGATCTCAAACCCAACATGCTGCACCGCCGTGTCGGGGAGGCCCTCGCGGTTAACTCCGTCAATCGCCTCCACCGCGTCCCTGGGAACCACCTTGGGAACCTTCTCACCATGATACGCGACCAGGCGCCGAACATAGTGACCCTAGTGGAGCAAGAGGCGAGCCACAACGGACCCTACTTTCTGGGGCGGTTTCTCGAGGCGTTGCACTACTACTCGGCAATCTTCGACTCGCTGGACGCGACGTTTCCGGCAGAATCCGCGCAGCGGGCGAAGGTGGAGCAGTACATATTTGCGCCGGAGATACGGAACATCGTGGCATGCGATGGGGCGGAGAGGTTTGAGCGGCATGAGAGATTGGAGAAGTGGCGGAAGATTATGGAGGGGAAGGGGTTCAAGGGGGTGGCGCTGAGTCCGAACGCGGTGACTCAGTCAAAGATATTGCTGGGGCTGTACTCTTGTGACGGGTATAGATTGACGGAGGATAAGGGGTGCTTGTTGCTTGGGTGGCAAGATAGGGCCATCGTTGCTGCTTCTGCATGGCGGTGTTGA 2133 0.5345 MPPKKEKGWRQALDSFGKSKGVGRPSDVVSDDAAYVAFLVAFHDVKKKMINSLCGTLKSENNSRTKHQPTSSNDSVLQSKKNATQSSGDLDQTSLTPPSLNLPALKFDLDGDVEVQSPDSSMWESFFADHLDADFMISSPVRNVPSPHASSYNCNYSYAQGMQGQSLSGCSPPRFSSSHVGAFNSSHKGKGLSPLHRVFNSPNNQYMQHVENLSLPAIEEFLEDYQGYSSTKVSSDIASSSECFDLSTQIPSSILDSLTLPNSSRYHGSVDEESSVHGGGSSQLSQESDIYHQMGSMASASLSQALQQERYQEKRQKQQAQQLQQQQRQQENLMVPIPIGIEQDQDSGLQLVHLLLACAEAVAKEEYMLARRYLHHLNRVVTPLGDSMQRVAACFTDSLSARLNATLTAKPSKQLTPSNSMEVLKIYQIVYQACPYVKFAHFTANQAIFEAFETEERVHIIDLDILQGYQWPAFMQALAARPAAAPFLRITGVGPCLDAVRETGRCLTELAHSLRIPFEFHAVGEQLEDLKPNMLHRRVGEALAVNSVNRLHRVPGNHLGNLLTMIRDQAPNIVTLVEQEASHNGPYFLGRFLEALHYYSAIFDSLDATFPAESAQRAKVEQYIFAPEIRNIVACDGAERFERHERLEKWRKIMEGKGFKGVALSPNAVTQSKILLGLYSCDGYRLTEDKGCLLLGWQDRAIVAASAWRC 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00294 710 ProSiteProfiles GRAS family profile. 342 709 IPR005202 -
Spst1g00294 710 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 302 704 IPR005202 -
Spst1g00294 710 Pfam GRAS domain family 351 709 IPR005202 -
Spst1g00294 710 MobiDBLite consensus disorder prediction 302 327 - -
Spst1g00294 710 Coils Coil 303 333 - -
Spst1g00294 710 MobiDBLite consensus disorder prediction 59 97 - -
Spst1g00294 710 MobiDBLite consensus disorder prediction 265 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g00294 Spst-Chr1 4121941 4126595 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g00294 276 710 GRAS Transcription Factor Family AT1G66350 39.869 1.80e-99 313
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Spst1g00294 GRAS 1.4e-131 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00294 - - gmx:100805039 1095.49