Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00285 ATGGATCCCAAGGGCTCAAAGCAGCCACTGCCACAGGAGGTGGTACCAAACTTTCTTAGCCTCCCCCAACAACAATCACCACCGTCACAACAACAACAAGGTAACAATAACAGCATGGGAGAGAACAAGCCAGCAGAGGTGAAGGATTTCCAGATAGTGGTTGCTGAGAAGGATGAGAGCAAGAAGCAGTTGGCACCAAAGAGGAGTTCCAACAAAGACAGGCACACCAAGGTTGAAGGGAGGGGGAGGAGGATAAGGATGCCTGCTCTATGTGCAGCTAGAATCTTCCAGTTGACCAGAGAATTGGGTCACAAATCTGATGGGGAAACCATCCAGTGGCTTCTTCAGCAGGCTGAGCCATCGATAATAGCTGCTACTGGGACAGGCACAATCCCAGCATCTGCTTTGGCTGCTGCTGGCAACTCGGTTTCACCACAAGGGGCCTCTCTTTCATCAGGGTTGCACCAAAAGATTGATGAATTGGGAGGGGCCAATATGGGGTCAGGGAGCAGTAGGACCAGTTGGCAAATGGTTGGGGGGAATTTGGGGAGACCCCATGTGGCCACAGGCTTATGGCCCCCCCATGTCAGTGGATTTGGATTTCAGACATCATCCGGTCCATCTAATGCCACCCTAGGCACTGAGAGTTCAAATTACCTGCAAAAGATTGGGTTCCCTGGCTTTGACTTGCCTGCTGCTGCCACCAACATGGGTCACATGAGTTTCACCTCAATTTTGGGTGGTGGAGGTGCCCAGCAGATGCCTGGTTTGGAGCTGGGTTTGTCCCAGGATGGCCATATTGGGGTCTTGAATCCACAGGCCTTGAGCCAGATTTATCATCAGATGGGTCAGGCTGGTAGATTGCAGCAGCAGCAACAGCATCAGCAACAACATCAACAAACTCCTGCAAAGGATGATTCTCAAGGCTCAGGACAGTAG 939 0.5154 MDPKGSKQPLPQEVVPNFLSLPQQQSPPSQQQQGNNNSMGENKPAEVKDFQIVVAEKDESKKQLAPKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGTGTIPASALAAAGNSVSPQGASLSSGLHQKIDELGGANMGSGSSRTSWQMVGGNLGRPHVATGLWPPHVSGFGFQTSSGPSNATLGTESSNYLQKIGFPGFDLPAAATNMGHMSFTSILGGGGAQQMPGLELGLSQDGHIGVLNPQALSQIYHQMGQAGRLQQQQQHQQQHQQTPAKDDSQGSGQ 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00285 312 MobiDBLite consensus disorder prediction 283 312 - -
Spst1g00285 312 MobiDBLite consensus disorder prediction 17 42 - -
Spst1g00285 312 ProSiteProfiles TCP domain profile. 71 125 IPR017887 -
Spst1g00285 312 MobiDBLite consensus disorder prediction 1 82 - -
Spst1g00285 312 MobiDBLite consensus disorder prediction 50 82 - -
Spst1g00285 312 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 23 288 IPR005333 GO:0003700
Spst1g00285 312 Pfam TCP family transcription factor 70 157 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g00285 Spst-Chr1 4020621 4021559 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g00285 1 312 TCP Transcription Factor Family AT3G27010 54.655 1.58e-84 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Spst1g00285 TCP 6.4e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00285 - - vun:114191990 514.227