Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00281 ATGTTGTTCCCTTGTCCCAATTCTTCCAGTTACCCCATTTCAACGAGTGGTGTGGGAAGCTCTCAGCATGGTTTTGGTGGTCAAAGCTCCAATGCATTTCTTGGTCTAAGGCCTAGTAACGAGAGTAGTAGTAGTGATCATGAAAAGAGAGGAGAAAGTGGTAGAGATGCTGCCATGTTAATGTCTCAGATCAGTGGTGGCATTAATGTGAGTGATGAATTAGGTGGTTTGGGAAATAGTAATAATAACAACAAAAAGAAAGTGGAGAAAAAGGTTAGAAAGCCTAGATATGCTTTCCAAACGAGGAGCCAGGTTGATATTCTCGATGATGGTTATCGATGGAGGAAGTATGGCCAAAAAGCTGTTAAAAACAACAAGTTTCCAAGGAGCTACTATCGGTGCACGCATCAAGGGTGCAATGTGAAGAAGCAAGTCCAACGACTAACCAAAGACGAAGGGGTAGTGGTGACTACTTATGAGGGAGTGCACACTCACCCAATTGAGAAGACAACAGATAACTTTGAACACATTTTGAGTCAGATGCAAATATACACTCCATTTTGA 564 0.4202 MLFPCPNSSSYPISTSGVGSSQHGFGGQSSNAFLGLRPSNESSSSDHEKRGESGRDAAMLMSQISGGINVSDELGGLGNSNNNNKKKVEKKVRKPRYAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCNVKKQVQRLTKDEGVVVTTYEGVHTHPIEKTTDNFEHILSQMQIYTPF 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00281 187 SUPERFAMILY WRKY DNA-binding domain 100 167 IPR036576 GO:0003700|GO:0006355|GO:0043565
Spst1g00281 187 ProSiteProfiles WRKY domain profile. 103 168 IPR003657 GO:0003700|GO:0006355|GO:0043565
Spst1g00281 187 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 23 170 IPR044810 GO:0003700
Spst1g00281 187 MobiDBLite consensus disorder prediction 72 95 - -
Spst1g00281 187 FunFam WRKY transcription factor 57 93 168 - -
Spst1g00281 187 Pfam WRKY DNA -binding domain 109 166 IPR003657 GO:0003700|GO:0006355|GO:0043565
Spst1g00281 187 MobiDBLite consensus disorder prediction 1 54 - -
Spst1g00281 187 SMART WRKY_cls 108 167 IPR003657 GO:0003700|GO:0006355|GO:0043565
Spst1g00281 187 Gene3D WRKY domain 92 167 IPR036576 GO:0003700|GO:0006355|GO:0043565
Spst1g00281 187 MobiDBLite consensus disorder prediction 7 41 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g00281 Spst-Chr1 3915288 3916974 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g00281 96 187 WRKY Transcription Factor Family AT5G13080 88.043 5.58e-59 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Spst1g00281 WRKY 1.7e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00281 - - pvu:PHAVU_001G088200g 332.413