Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00279 ATGGATTGGGACGGGAAAGAGTTTTCCTGGGATCCACGTGGGCTGGAGCTGGCTAATGGTGAAGGGCAGATTGAAGATGCTTCAGTGGATTTGAGGCTTGGTGAAGAAAAGTCAGTCCCAGATGTTGCTAAGGACTCAAGAGACTCAAAAACTGTGTCTTCACCATGTGGGTCATCAAAAAGATCCCGCCTTCAGAATGGATCACAGAATATGTGTTGTTCTGTTGATGGATGCAACTCTGACCTCAGTGATTGCAGAGAGTATCATAGGCGCCATAGGGTCTGTGAAAAGCACTCCAAAACCCCAGTTGTGTTGGTGGGGGGGAAACAACAACGGTTCTGCCAGCAATGCAGCAGGTTTCACTCACTTGGGGAGTTTGATGAGGTTAAGAGGAGTTGTAGGAAAAGGCTTGATGGGCATAACAGGCGCAGGAGAAAACCTCAGCCTCCCTCTCTTTTCATGGCTGCTGAGAAATTCATGTACAATTACAAAGGACCTAGAATCCTGCACTTTGGCAGCCCTGAGACATATGCCAACCCTATTATGAGGAGTATGTGGTCTGCCACTGCCAAAGCTGGAGCTGAATCTGGTTATGATCCACCTCGACTTTTATACAGAATTGACAAGCACAAGCAAGATAAGGGACATCCTCTTTGGCAAGAAAGTGACCCTAAAGTAGGCCATTTAAATGAAGCAATGCTTGGAACTCCCATTTGTCAGCCTATTCATGGCACCATTACCCCATCAACCGGTGGAAAGAGCAGTCGAAAGCTGTCTTCAGATGCTAAACCTGGATCCTTTGACTCAGGTTGTGCTCTCTATCTTCTGTCAACACTTCAATCACAAAGTCCAGAGTCGAGTATGGTGCAATCTAGCATCTCCTGTCCAATGCAATCTCCATCTGGATCTGTGCATTTTGATGCTGTGAATGAGTATGCGTACTCAGAAACGGAAAAAGATAAGCCTAGTGGTCAAGTATTGGTTCTTGATGCAAACACAACAAACCTTCATTACAACGGAATGCTGCAAATGGGGCTTGATGGGTTGGTTGACAATGACGACCCGCTGACACTTCCCTTCTTGTGGGAGTAG 1092 0.4652 MDWDGKEFSWDPRGLELANGEGQIEDASVDLRLGEEKSVPDVAKDSRDSKTVSSPCGSSKRSRLQNGSQNMCCSVDGCNSDLSDCREYHRRHRVCEKHSKTPVVLVGGKQQRFCQQCSRFHSLGEFDEVKRSCRKRLDGHNRRRRKPQPPSLFMAAEKFMYNYKGPRILHFGSPETYANPIMRSMWSATAKAGAESGYDPPRLLYRIDKHKQDKGHPLWQESDPKVGHLNEAMLGTPICQPIHGTITPSTGGKSSRKLSSDAKPGSFDSGCALYLLSTLQSQSPESSMVQSSISCPMQSPSGSVHFDAVNEYAYSETEKDKPSGQVLVLDANTTNLHYNGMLQMGLDGLVDNDDPLTLPFLWE 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00279 363 FunFam Squamosa promoter-binding-like protein 14 64 134 - -
Spst1g00279 363 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 52 300 IPR044817 GO:0003677
Spst1g00279 363 SUPERFAMILY SBT domain 71 152 IPR036893 GO:0003677|GO:0005634
Spst1g00279 363 ProSiteProfiles Zinc finger SBP-type profile. 70 147 IPR004333 GO:0003677
Spst1g00279 363 MobiDBLite consensus disorder prediction 49 67 - -
Spst1g00279 363 Pfam SBP domain 73 146 IPR004333 GO:0003677
Spst1g00279 363 Gene3D - 64 134 IPR036893 GO:0003677|GO:0005634
Spst1g00279 363 MobiDBLite consensus disorder prediction 1 67 - -
Spst1g00279 363 MobiDBLite consensus disorder prediction 28 48 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g00279 Spst-Chr1 3890292 3892862 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g00279 73 171 SBP-box Gene Family AT5G50670 66.667 2.09e-42 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Spst1g00279 SBP 1.2e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00279 - - gmx:100798317 681.404