Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00258 ATGTCCATCTTGCCCTCACAAACCCAAGCACCATCTTCGTCCTCTTCCTCTGCGCCATCTTCCAGCCCTAATCCCCAACATGGCATCGGAATCCCTATTCCTCAACAATCCTTCCCTTCTCTCTCCCCCCCACTTCACCACGCTCTCGGATCTCTACAGATCTCCGATAACCCAGGTTCATCTACTCAAGCTGCTGAAGAATCTGGTGGACCTTCCGGAAAGGTGACAGAATTAGGGTCTCCAAGTGGAGCGATGATTTCACCTCAACAAAACTCTAGAACACGTTCTAGGAGTCACGGGGGAAGACGGGCGGGAATGGTTTCTTCTCACAGAAACCAACAAGCTCATGGGTCCATGAGTTCTCATGGAAGTACCCCTTTGGCAGGGAGAAAAGCTCAGACTGTGAACGGAAATTACTTGCTGAATTTTCAATATGACCCTATATCCCGTTCTCAACCACGTGGTCCCCCTCCCCACCCTGCAACAAGAAGGAATTGGAAGAGGAAGCCATATAATAAAGATTTGTTTTTGCAGGCAAATTACAAGTTCATGGTTCTAGATTCGGGAAATTATTCTCCTGAGTCAATGGATCCAGATAAAATGTTGCAGTGGGAAGATATTATATGTGTGACATATTTGACTCCCTTTTCAATTCAGTGTCCAATTTGTTTGGAGTATCCACTGTGTCCACAGATAACCTCATGTGGACATATTTTCTGTTTCCCATGTATTCTACAGTACTTAATGATGGGTGAAGAGGATCACAAAGGTGATATCTGGAAAAGGTGCCCTTTGTGCTTTGTGATGATATCTGCCAAGGATTTATATACAGTCCACATCACCAATGTTAAACAGTATCAAGTAGGAGAAAATGTTGAGTTCACCTTTTTGACTCGAAAAAAAGATTCGTTTACTCTTTCACATAAAAATAAAAAAGAGACCAATGTAGCAGCATGTGGTAATGGATATTTCTGCGATCCCTTTTCTAAGTTTACTCTTACATCAGATGTAGATCTCTCAGTAAGACATTCAATATCAGATCTAGATGGTTGGCTGGCCAGAGCTGATTCTGGTCTCGTTGATGACCTGGAGAAGCTTCCTTATGTTTGTGCTGCAATGCAACAACTGGAACAGAGGAAGAGGTATTGGAATGAGCAAAAGTCTCATGACAGTGAAAATTCTAAGTTTATTGATCATGGACATCAGATACCATCAACGGTTACATGTTCTCTGGATACTGATGATGAAAACTATGGATCGAGAACTTCCTCTACTGATTACCATAACCAAATTAAGGTTACCATGCTGGATAAGTCATCTGCTGGAACCTGTTCAGATGAAACTTTGAATGTGGAGAAAGAATTAATAGAGCCGGAAATGAATTTTTCTTCTTCATATGAGGAGAAAAATGGTATCCAAAGGCCTTCAGATGATGGTGTTGCTGGAGAAGGGAAGGGAAATGATTCATACAGTTTCTACCAGGCTGCTGATGGTCAGCATTTAATTCTTCATCCTCTGAACATGAAGTGTTTGCTCCACCAATATGGGAGCTATGATATGCTTCCACACAGAATAAATGGAAGGATTCTACAATTGGAGACAGTTACTCAGTCTGAGGCCATGAGGAGGCGGTATCGATTCCTAAGTCATTTTCCGTTAACCACAATATTTCAGCTCTGTGAAGTTGATTTGAGTGAGTTGTTACCTCCTGAAGCACTGGCTCCATTTATGGATGAAATAAAGAAACGTGCAAATCAGAGGAAGCAACTTGCAAAAAAGAATGCCACAAAGCCTTCTAATTGCAAGTCAATGCTGGCTGTTTTTGCTGCTGTTTGTTGTACTGTAACGTCTTTTATGGCACTGAAAGAATCCACAAAGCCTTCTAATTGCGAGTCAATGCTGGCTGAACGGAAGGAAAAGATAAGGGCTGATGCTACTGATACCTACTCCTTTCCCATATCATTGAGTAGTCGGCTTACATCTCGTGATGATCCTCCAACATTCTCCATGGATGACTTTGAAGCTCTAGGAAATTCAACTATATCCTCAAGTGCTCCCATAGCTGGGGAGAGAAAATCGTTCTCAAATGTCACAAGGCTTGGGTTTGCTGCTGCCCATGATTCTCCATCCTTGCAAATTCAAGAAACTAATGGTTCGAGAAGCGGGGAGACACAGTCATACTCCAACGTTATATCAAGAGCAGAATCAAATATAAGCTCGAGTGCACCGAAGACTAATGAGTTGGGGAAGAAAGGAAAGAAGCCAAATCGAGTTCTTCTGTCAACAGCTGGAGGTAGACGTTATTGA 2307 0.4239 MSILPSQTQAPSSSSSSAPSSSPNPQHGIGIPIPQQSFPSLSPPLHHALGSLQISDNPGSSTQAAEESGGPSGKVTELGSPSGAMISPQQNSRTRSRSHGGRRAGMVSSHRNQQAHGSMSSHGSTPLAGRKAQTVNGNYLLNFQYDPISRSQPRGPPPHPATRRNWKRKPYNKDLFLQANYKFMVLDSGNYSPESMDPDKMLQWEDIICVTYLTPFSIQCPICLEYPLCPQITSCGHIFCFPCILQYLMMGEEDHKGDIWKRCPLCFVMISAKDLYTVHITNVKQYQVGENVEFTFLTRKKDSFTLSHKNKKETNVAACGNGYFCDPFSKFTLTSDVDLSVRHSISDLDGWLARADSGLVDDLEKLPYVCAAMQQLEQRKRYWNEQKSHDSENSKFIDHGHQIPSTVTCSLDTDDENYGSRTSSTDYHNQIKVTMLDKSSAGTCSDETLNVEKELIEPEMNFSSSYEEKNGIQRPSDDGVAGEGKGNDSYSFYQAADGQHLILHPLNMKCLLHQYGSYDMLPHRINGRILQLETVTQSEAMRRRYRFLSHFPLTTIFQLCEVDLSELLPPEALAPFMDEIKKRANQRKQLAKKNATKPSNCKSMLAVFAAVCCTVTSFMALKESTKPSNCESMLAERKEKIRADATDTYSFPISLSSRLTSRDDPPTFSMDDFEALGNSTISSSAPIAGERKSFSNVTRLGFAAAHDSPSLQIQETNGSRSGETQSYSNVISRAESNISSSAPKTNELGKKGKKPNRVLLSTAGGRRY 768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00258 768 MobiDBLite consensus disorder prediction 1 42 - -
Spst1g00258 768 MobiDBLite consensus disorder prediction 53 69 - -
Spst1g00258 768 MobiDBLite consensus disorder prediction 462 485 - -
Spst1g00258 768 SMART ring_2 220 266 IPR001841 -
Spst1g00258 768 MobiDBLite consensus disorder prediction 146 167 - -
Spst1g00258 768 MobiDBLite consensus disorder prediction 1 130 - -
Spst1g00258 768 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 213 303 IPR013083 -
Spst1g00258 768 MobiDBLite consensus disorder prediction 709 727 - -
Spst1g00258 768 SUPERFAMILY RING/U-box 219 273 - -
Spst1g00258 768 CDD RING-HC_RNF10 218 275 - -
Spst1g00258 768 MobiDBLite consensus disorder prediction 733 768 - -
Spst1g00258 768 ProSiteProfiles Zinc finger RING-type profile. 220 266 IPR001841 -
Spst1g00258 768 FunFam RING finger protein 10 213 281 - -
Spst1g00258 768 MobiDBLite consensus disorder prediction 708 727 - -
Spst1g00258 768 PANTHER RING FINGER 10 FAMILY MEMBER 61 768 IPR039739 -
Spst1g00258 768 MobiDBLite consensus disorder prediction 107 130 - -
Spst1g00258 768 ProSitePatterns Zinc finger RING-type signature. 235 244 IPR017907 -
Spst1g00258 768 Pfam Zinc finger, C3HC4 type (RING finger) 220 266 IPR018957 GO:0046872
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g00258 117 732 C3H Transcription Factor Family AT3G26730 50.079 0.0 583
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00258 K26979 - gmx:100798764 1147.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g00258 1 3604264 3612735 Spst1g00258 1 3604264 3612735 ECH