Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00254 ATGGTTTCCACCAGGGCGGATAAGAGTTTAGTATCGAAAATTGCCGTGACGAACGGCGTTAAAGGAGTTAAGGATTTGAAGAAATTGAAAGAATCGAAGGCTTATCTAACGCAGCCGCGTAGGTCGAGCGCTCGAATTCAAGCGCTGCAGAAAGCGGAAGAGGAGGTTCTAGCTGGACGAAATGCGGAGGTAGTTAAAGAGAAGGACAAATGCCAAAACGAACTGACGGACAAGGGGAAGAAACTCAGTAGAAAGAGTGGCCGTGAGGAGAGTGTGGTGGTGGAAGAAGAGGTTGTTTTACCGCCTAAGAAGAAGCAGGTGGCGTGCAGCAAGGGTGAGGGGGAAGTAGAGAATGGGAAGGAGGAGCCGGAAAATGTGGTAGGGGTTTTTGGAGATAAGAGTGATTTGGTTAAAGTCAAAGAGACTATAAGATTATTTAATAAACATTATCTTCAGTTAATCCAGGAAGAAGAGAAGAGGTGTGGAAAGGCAGAGGCTGAGAGGAAAGCTTCTAAAAATCCTCCAAAAAAGGCTGAGCGGAAAGCTGCTAAAAAACCTTCTAAAATGGCTTCAAGATCGAAGAAAGTTGGTCCACCTAAGGATTCAAAGACCACAGCTAAACGTCCTGATCTAAAGGCTATAACCAAGATGATGGAAAATAACGAGATACTATACCCTGATAAACGAATTGGCAGTATTCCAGGTATTGAAGTTGGGTATCAGTTCTTTTCTCGTGCTGAAATGGTGGCAATTGGTTTTCATAGCCATTGGTTAAATGGCATTGATTATATGGGCCAGTCCTATGCCAAAATGTATAGCTACGAATTTCCGATTGCTGTTGCGATTGTTTTGTCGGGCATGTATGAGGATGATCTTGATAATGCTGAGGATGTTATATACACTGGTCAAGGGGGGCATAATCTAACTGGTGATAAGCGGCAAATCCAGGATCAAAAGATGGAGCGTGGTAACCTAGCTCTCAAGAATTGTGTGGAGCAATGTGTGCCTGTTAGAGTCATTCGAGGTCATGATTCTTCAAGTAGTTACTCTGGTAAAGTATACACATATGATGGCTTGTACAAGGTTGTCCATTGGTGGGAAGATGAAGGGATATCTGGATATAAAATCTTTAAGTATCGACTTAGGAGACTTGAAGGGCAACCTACATTAACCACAAATCAGGTATATTTTACTAATGGGCGCGTGCCTCAATCTATTGCAGAAATACGCGGATTGGTTTGTGAGGATATCACCGGAGGTCAAGAAGATATTCCCATTCCGGCAACAAATGTGGTAGATGACCCCCCTGTTGCACCCACAGGTTTCACGTATTGTAAGTCTGTTAAGGTTGCCAAAAATGTTAAACTTCCCACTAATGCCACCGGATGTAAATGCCAAGGCTCCTGTAATGACCCAACAACCTGTGCATGTGCTTTGCGTAATGGGTCTGATTTTCCCTATGTATCTCGGAATGGTGGAAGGTTAGTAGAAGCTAAAGATGTAGTATTTGAATGTGGACCCAAATGTGGTTGTGGTCCTGGTTGTGTGAATCGAACTTCTCAAAAAGGACTCAGATATCGACTGGAGGTTTTCCGGACTGCCAAAAAAGGATGGGCTGTCAGATCCTGGGATTTTATACCTTCGGGAGCACCAGTTTGTGAGTACACAGGAATACTTGCTAGAGCGGAAGACATGGATAGCGTGTTGGAAAACAATTATATTTTTGAGATAGATTGCTTGCAAACGATCAAGGGCCTTGGTGGTAGAGAGAGACGGGCACAAGATGGAGATATTCCTGCAGATATTTTGAACAAATATGACGATCAAAGTTCCGAAAGTGCATCAGAGTTTTGTATCGATGCAGGATCTACTGGAAATATTGCTAGGTTTATAAACCATTGTTGTGAGCCTAATCTGTTTGTTCAGTGTGTATTGAGCACACACGATGATTTGAGGCTGGCTCGTGTCATGCTGTTTGCTGCGGACAACATACCCCCTTTGCAGGAATTAACGTATGACTATGGGTATGCGCTTGATAGCGTGTTGGACTCTAATGGGAAGATCAAGCAAATGCCATGCTATTGTGGAGCCGCAGACTGCAGGAAACGATTATTCTAA 2118 0.4353 MVSTRADKSLVSKIAVTNGVKGVKDLKKLKESKAYLTQPRRSSARIQALQKAEEEVLAGRNAEVVKEKDKCQNELTDKGKKLSRKSGREESVVVEEEVVLPPKKKQVACSKGEGEVENGKEEPENVVGVFGDKSDLVKVKETIRLFNKHYLQLIQEEEKRCGKAEAERKASKNPPKKAERKAAKKPSKMASRSKKVGPPKDSKTTAKRPDLKAITKMMENNEILYPDKRIGSIPGIEVGYQFFSRAEMVAIGFHSHWLNGIDYMGQSYAKMYSYEFPIAVAIVLSGMYEDDLDNAEDVIYTGQGGHNLTGDKRQIQDQKMERGNLALKNCVEQCVPVRVIRGHDSSSSYSGKVYTYDGLYKVVHWWEDEGISGYKIFKYRLRRLEGQPTLTTNQVYFTNGRVPQSIAEIRGLVCEDITGGQEDIPIPATNVVDDPPVAPTGFTYCKSVKVAKNVKLPTNATGCKCQGSCNDPTTCACALRNGSDFPYVSRNGGRLVEAKDVVFECGPKCGCGPGCVNRTSQKGLRYRLEVFRTAKKGWAVRSWDFIPSGAPVCEYTGILARAEDMDSVLENNYIFEIDCLQTIKGLGGRERRAQDGDIPADILNKYDDQSSESASEFCIDAGSTGNIARFINHCCEPNLFVQCVLSTHDDLRLARVMLFAADNIPPLQELTYDYGYALDSVLDSNGKIKQMPCYCGAADCRKRLF 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00254 705 SMART PostSET_3 689 705 IPR003616 -
Spst1g00254 705 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 36 705 IPR025794 GO:0016571
Spst1g00254 705 Gene3D SET domain 407 705 IPR046341 -
Spst1g00254 705 SMART set_7 526 681 IPR001214 GO:0005515
Spst1g00254 705 Pfam SAD/SRA domain 230 387 IPR003105 -
Spst1g00254 705 Pfam Pre-SET motif 418 518 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Spst1g00254 705 SMART G9a_1 226 387 IPR003105 -
Spst1g00254 705 ProSiteProfiles SET domain profile. 526 675 IPR001214 GO:0005515
Spst1g00254 705 ProSiteProfiles Post-SET domain profile. 689 705 IPR003616 -
Spst1g00254 705 MobiDBLite consensus disorder prediction 164 209 - -
Spst1g00254 705 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 65 698 - -
Spst1g00254 705 SMART preset_2 414 510 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Spst1g00254 705 SUPERFAMILY SET domain 411 681 IPR046341 -
Spst1g00254 705 Gene3D - 213 400 IPR036987 -
Spst1g00254 705 Coils Coil 147 167 - -
Spst1g00254 705 ProSiteProfiles Pre-SET domain profile. 461 523 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Spst1g00254 705 MobiDBLite consensus disorder prediction 69 126 - -
Spst1g00254 705 MobiDBLite consensus disorder prediction 194 209 - -
Spst1g00254 705 ProSiteProfiles YDG domain profile. 231 383 IPR003105 -
Spst1g00254 705 SUPERFAMILY PUA domain-like 213 405 IPR015947 -
Spst1g00254 705 Pfam SET domain 537 675 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g00254 Spst-Chr1 3496924 3521298 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g00254 217 705 EF-hand Containing Proteins AT5G13960 66.734 0.0 703
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Spst1g00254 SAD_SRA 5.8e-49 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00254 K11420 - gmx:100796701 1103.58