Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00250 ATGGATAACGAAGAAAAATATGATGGATATAAGACCATAGAAGAACCTTTCATAGAGTTGAACAAGGTGGATCGAAGGCATGGAAAGAGGCCTCTCCCTTCTGATCATGCATCAAGGGAGAAAAGGGAAGGTTTCAACTTCCCTACCCAACAAGGGGAAGAAGCTTCTTCATTCCCCTATGTACATCCAATCAATACTGGTCATGATAGCACCCCTACACCAATCCCACAACATGGCCAAATAACCACTTCTAGCTTGATTGAGACTCAGGACCCATCTCAGCAGCCTTTAAATGAAGGGAGAAAAAGACACTATAGAGGAGTTAGGCAGAGACCATGGGGGAAATGGGCTGCCGAAATCCGGGACCCTAAAAAGGCTGCTAGAGTGTGGCTTGGCACGTTTGACACGGCAGAGGCTGCAGCTGCTGCTTATGATGCTGCTGCGTTGAAGTTCAAAGGATCCAAAGCTAAACTCAATTTCCCAGAACACGTTCTTCTTGCTCCAATACCACCAACACCTTCACCTTCTATTCAAAATATTAACTACAATAATAGTTATTATGCTCCTTCTTCACCTCTTGCACCAACACCTTCACCAGTTTATCAACCACAACCCTTGTTCTCACCATCACAAGAAGAAGGGTTCCCAAATCTAATGCAGTACGCCCAGATTCTTTGGAGTAGGGATGATGATGATCTACAACGTGTTGCTTCAGGCCTTCACCCCCACCACCATCATAATCCCAATGAGTCATTCCATGATTCGAGTTCTTCAACTTTCTTCTCATCCTCGTCCACTTCTGTGACTGAGTCTGATCAACAGATTGGAGATGACACGAGTGGATCCAAGGAGGGAGAGTATTATGGTTCTTGCTTTTTTAGAGGGAGTGATTTTCATGGCAAGAATTGA 909 0.4466 MDNEEKYDGYKTIEEPFIELNKVDRRHGKRPLPSDHASREKREGFNFPTQQGEEASSFPYVHPINTGHDSTPTPIPQHGQITTSSLIETQDPSQQPLNEGRKRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAAAAYDAAALKFKGSKAKLNFPEHVLLAPIPPTPSPSIQNINYNNSYYAPSSPLAPTPSPVYQPQPLFSPSQEEGFPNLMQYAQILWSRDDDDLQRVASGLHPHHHHNPNESFHDSSSSTFFSSSSTSVTESDQQIGDDTSGSKEGEYYGSCFFRGSDFHGKN 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00250 302 CDD AP2 104 163 IPR001471 GO:0003700|GO:0006355
Spst1g00250 302 Pfam AP2 domain 104 153 IPR001471 GO:0003700|GO:0006355
Spst1g00250 302 SMART rav1_2 104 167 IPR001471 GO:0003700|GO:0006355
Spst1g00250 302 MobiDBLite consensus disorder prediction 252 280 - -
Spst1g00250 302 MobiDBLite consensus disorder prediction 22 77 - -
Spst1g00250 302 MobiDBLite consensus disorder prediction 238 302 - -
Spst1g00250 302 Gene3D AP2/ERF domain 103 163 IPR036955 GO:0003700|GO:0006355
Spst1g00250 302 SUPERFAMILY DNA-binding domain 104 162 IPR016177 GO:0003677
Spst1g00250 302 ProSiteProfiles AP2/ERF domain profile. 104 161 IPR001471 GO:0003700|GO:0006355
Spst1g00250 302 PANTHER DNA-BINDING DOMAIN 74 255 IPR044808 GO:0003700|GO:0009873
Spst1g00250 302 MobiDBLite consensus disorder prediction 63 77 - -
Spst1g00250 302 FunFam Ethylene-responsive transcription factor 2 103 162 - -
Spst1g00250 302 PRINTS Ethylene responsive element binding protein signature 127 143 IPR001471 GO:0003700|GO:0006355
Spst1g00250 302 PRINTS Ethylene responsive element binding protein signature 105 116 IPR001471 GO:0003700|GO:0006355
Spst1g00250 302 MobiDBLite consensus disorder prediction 22 47 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g00250 Spst-Chr1 3436212 3439012 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g00250 85 191 AP2-EREBP Transcription Factor Family AT5G61890 61.475 4.21e-38 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Spst1g00250 AP2 1.8e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00250 - - var:108318772 455.677
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g00250 1 3436212 3439012 Spst9g01781 9 20082605 20084341 ECH
Spst1g00250 1 3436212 3439012 Spst1g00250 1 3436212 3439012 ECH
Spst3g01198 3 15525370 15525846 Spst1g00250 1 3436212 3439012 ECH
Spst9g01781 9 20082605 20084341 Spst1g00250 1 3436212 3439012 ECH
Spst1g00250 1 3436212 3439012 Spst4g03396 4 74210416 74212380 PCT