Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00245 ATGGATCTTCTTTTTCTTCTTCAGTGCCTTCTCTTCTTCACTTCGCATCACGCAAATGCCCTCAATGCTTCAATTTCTCGTGACGCATTGTCCCTTCTCTCTTTCAAACGCTTCGTCTCTTCCGACCCTTCCAACCTCCTCGCTGGTTGGACCAAGCAAACCTCCTCCAATATCTGCAGCTGGAGCGCCGTCGCGTGCGGCAGCGCCGGGATCCCCTCTGGCCTAGTCACCGCCCTCAACATTACCGGTCTCGGCGGCGGCCAGTTGTCGCCCTCTGTCGGCGACTTGTCCGAGCTCCGCGTCCTATCCCTCGCCGGAAACATGTTCTCCGGCGAGATTCCGGCTAGCGTAGGGAATCTCCGGTTTCTCGAGGTCCTCGAGCTGCAAGGGAACAACTTTTCAGGGACAGTCCCGACCCAGATGAGTTTTGCTTTTCTTCAGTCTCTTAAACTTGTTAACCTCTCTGGTAATGCCTTCTCTGGTTCGATTCCGAGTGGGATTATTGGCTCTGGGAGTGTGAAAATCGTTGATTTGTCGAATAATCAGTTTTCTGGTGTGATTCCTGTGAATGGTACTTGTGATTCGTTGAAGCATTTGAAGTTGTCTCATAACTTTTTGACTGGGGAGATTCCACCCCAAATTGGGAAATGTAGAAAATTGAGGACCCTTTTGGTCGATGGGAACATCTTGGAAGGTAGAATCCCTTCTGAGATTGGCCATATTGTTGAACTGAGAGTTCTGGATGTTTCTAGAAACTCCCTCACTGGAAGGATCCCCAAGGAGTTGGCTAATTGTGTGAAACTGTCTGTGCTTGTGCTTACTGATTTGTTTGAGGATCGTGATGAAAGAGGATTGGAGGATGGCTTTAGAGGAGAGTTTAATGCCTTTGCTGGGAACATACCTCATCAAGTGTTGCTGCTTTCAAGTCTAAGGGTGTTGTGGGCGCCAAGAGCGAATCTTGGTGGACGGTTGCCAAGTGGCTGGTCGGATTTGTGTTCTCTGAGGGTGCTCAATTTGGTGCAGAATTATGTTACCGGTGTCTTGCCTGAGAGTTTGGGGATGTGTAGGAATTTGAGTTTCTTGGACTTGAGCTCTAATAATTTGGTGGGGTATCTGCCTTCTTTGCAGCTTCATATTCCTTGTATGGTGTACTTTAATGTCAGCAGGAATAATATATCTGGCACTCTTAAAGGATTTAAGAAAGAAAGCTGTGGTGTGAGTGCACTAGACCCTTCATTCCTAGGATTGGATGGTTTTAGTGATGATGCATACTTTAATTTTCCTGTTTTGAGGTTTCAAAAGAATGCTTTCATTGGATCAGGTTTTAAGGATAATAACATTATTGTTGTTAGCCATGATTTCAGTTGGAATAGTTTTGTGGGATCCTTGCCTTTGTTCTCTCTTGGAGATAGCCTTCTTAATTCCAATCTTAAAGTCTCCTATGCACTGTCTCTCAATAATAATAGGTTCAATGGAACTCTACCATACCAGTTAGTTTCAAACTGTAATGACCTCAAGACATTGTCAGTTAACTTGAGTGTGAACCAACTATCGGGTGGGAATTTCCAAACATCGGTTTTGGAGTGCCTGAAGTTGACAGATTTTGAAGCAGCCTACAACCAGATTGATGGGTCAATTGGACCAGGTATAGGTAACTTGACGATGCTTCAGCATCTTGATTTAAGTGGGAACAAGCTATCTAGATCACTGCCTAATCAGTTGGGAAACCTACAAAACATGAAATGGATGCATCTGGGAGGAAACAATCTAACAGGAGAAATTCCTTCCCAACTTGGCCAATTGACTTCACTTGCTGTTTTGAATCTGTCTCACAATGCTCTAGTTGGTTCAATTCCTGCGAGTTTGTCAAATGCCAAAAGTTTTGAAACTCTGTTGGTGGACCACAACAAACTTTCTGGAGAAATACCTTCAGCTTTTTCTTCTCTTTCCAATCTTGTTCAGCTGGATGTTTCTTTTAACAATCTTTCTGGTCATATTCCTCGTCTTCGACACCCAAGTGACTGTGATTCCTATAAAGGAAATCCACACCTGCACCCTTGCCCTGATCCATATTCTGATTCACCTTCTTCTCTTCCAGTACCCCTTGAAATCCAGCATCATCATGCACATAGAGGGAGGAAATTAAGAACATTGGTTATTGCTGTGGTCACTTCTGCTACTGTGGTGCTCTGCACACTTCTGGGAATAGTATTGGTCATATTTTCTGGTAGGAGTAAATTTGGTCGGCTTAGCAGTATAAGAAGGCGACAGGTAGTGACCTTTCAAGATGTTCCAACTGAACTGAGTTATGACAGTGTGGCCACAGCCACTGGAAACTTCAGCATCCGGCATCTAATTGGCACAGGCGGCTTTGGGTCAACGTACAAGGCAGAACTGTCCCCAGGCTTTCTTGTTGCCATAAAGAGGTTGTCCATAGGTAGATTTCAAGGCATCCAACAGTTTGAAACTGAAATAAGGACACTAGGAAGAATTCGACATAAGAATCTTGTGACTCTTATTGGCTATTATGTAGGGAAGACTGAAATGTTCTTAATTTACAACTACCTTTCTGGTGGGAACCTTGAAGCTTTCATACATGATAGGTCAGGGAAAAATGTTCAGTGGCCAGTTATTTACAAAATAGCAAAAGACATAGCAGAGGCCCTTGCTTTCCTTCACTACTCCTGTGTTCCTCGCATTGTTCACCGGGATATCAAACCTAGCAACATTTTACTTGATGAATATCACAATGCCTACCTGTCAGATTTTGGCTTGGCACGACTGCTTGAGGTAACTGAGACCCATGCCACCACTGATGTTGCAGGCACATTTGGTTATGTAGCACCAGAATATGCCACCACTTGCAGGGTTTCTGACAAAGCAGATGTCTACAGCTTTGGTGTAGTGTTATTAGAATTGATGTCTGGAAGAAAGTCACTTGATCCATCTTTTTCTGAGTATGGAAATGGATTCAACATTGTACCATGGGCAGAGCTGCTAATGACCGAAGGCCGTTGTTCTGAGCTATTTTCTTCTACTTTGTGGGAAGCAGGGCCTAAGGAAAAAATGTTGGGGCTTTTAAAGCTTGCATTAACATGCACGGAAGAGACTCTTTCTATTCGACCATCAATGAAGCAGGTTCTTGAGAAATTGAAACATTTGAAAAATTGA 3171 0.4393 MDLLFLLQCLLFFTSHHANALNASISRDALSLLSFKRFVSSDPSNLLAGWTKQTSSNICSWSAVACGSAGIPSGLVTALNITGLGGGQLSPSVGDLSELRVLSLAGNMFSGEIPASVGNLRFLEVLELQGNNFSGTVPTQMSFAFLQSLKLVNLSGNAFSGSIPSGIIGSGSVKIVDLSNNQFSGVIPVNGTCDSLKHLKLSHNFLTGEIPPQIGKCRKLRTLLVDGNILEGRIPSEIGHIVELRVLDVSRNSLTGRIPKELANCVKLSVLVLTDLFEDRDERGLEDGFRGEFNAFAGNIPHQVLLLSSLRVLWAPRANLGGRLPSGWSDLCSLRVLNLVQNYVTGVLPESLGMCRNLSFLDLSSNNLVGYLPSLQLHIPCMVYFNVSRNNISGTLKGFKKESCGVSALDPSFLGLDGFSDDAYFNFPVLRFQKNAFIGSGFKDNNIIVVSHDFSWNSFVGSLPLFSLGDSLLNSNLKVSYALSLNNNRFNGTLPYQLVSNCNDLKTLSVNLSVNQLSGGNFQTSVLECLKLTDFEAAYNQIDGSIGPGIGNLTMLQHLDLSGNKLSRSLPNQLGNLQNMKWMHLGGNNLTGEIPSQLGQLTSLAVLNLSHNALVGSIPASLSNAKSFETLLVDHNKLSGEIPSAFSSLSNLVQLDVSFNNLSGHIPRLRHPSDCDSYKGNPHLHPCPDPYSDSPSSLPVPLEIQHHHAHRGRKLRTLVIAVVTSATVVLCTLLGIVLVIFSGRSKFGRLSSIRRRQVVTFQDVPTELSYDSVATATGNFSIRHLIGTGGFGSTYKAELSPGFLVAIKRLSIGRFQGIQQFETEIRTLGRIRHKNLVTLIGYYVGKTEMFLIYNYLSGGNLEAFIHDRSGKNVQWPVIYKIAKDIAEALAFLHYSCVPRIVHRDIKPSNILLDEYHNAYLSDFGLARLLEVTETHATTDVAGTFGYVAPEYATTCRVSDKADVYSFGVVLLELMSGRKSLDPSFSEYGNGFNIVPWAELLMTEGRCSELFSSTLWEAGPKEKMLGLLKLALTCTEETLSIRPSMKQVLEKLKHLKN 1056
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00245 1056 SMART LRR_typ_2 146 170 IPR003591 -
Spst1g00245 1056 SMART LRR_typ_2 649 672 IPR003591 -
Spst1g00245 1056 SMART LRR_typ_2 96 120 IPR003591 -
Spst1g00245 1056 SMART LRR_typ_2 601 625 IPR003591 -
Spst1g00245 1056 SMART LRR_typ_2 331 354 IPR003591 -
Spst1g00245 1056 SMART LRR_typ_2 553 577 IPR003591 -
Spst1g00245 1056 SMART LRR_typ_2 193 217 IPR003591 -
Spst1g00245 1056 SMART LRR_typ_2 241 265 IPR003591 -
Spst1g00245 1056 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 856 1056 - -
Spst1g00245 1056 Pfam Leucine Rich Repeat 195 217 IPR001611 GO:0005515
Spst1g00245 1056 Pfam Leucine Rich Repeat 244 265 IPR001611 GO:0005515
Spst1g00245 1056 Pfam Leucine Rich Repeat 556 577 IPR001611 GO:0005515
Spst1g00245 1056 FunFam Nuclear pore complex protein NUP107 25 189 - -
Spst1g00245 1056 Gene3D Transferase(Phosphotransferase) domain 1 856 1055 - -
Spst1g00245 1056 Gene3D Ribonuclease Inhibitor 86 276 IPR032675 -
Spst1g00245 1056 Gene3D Phosphorylase Kinase; domain 1 742 855 - -
Spst1g00245 1056 Pfam Leucine rich repeat N-terminal domain 27 66 IPR013210 -
Spst1g00245 1056 SUPERFAMILY L domain-like 298 671 - -
Spst1g00245 1056 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 214 1053 - -
Spst1g00245 1056 PRINTS Leucine-rich repeat signature 601 614 - -
Spst1g00245 1056 PRINTS Leucine-rich repeat signature 556 569 - -
Spst1g00245 1056 Gene3D Ribonuclease Inhibitor 287 412 IPR032675 -
Spst1g00245 1056 Gene3D Ribonuclease Inhibitor 429 696 IPR032675 -
Spst1g00245 1056 Gene3D Ribonuclease Inhibitor 22 85 IPR032675 -
Spst1g00245 1056 CDD STKc_IRAK 786 1054 - -
Spst1g00245 1056 Pfam Protein kinase domain 782 983 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst1g00245 1056 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 288 408 - -
Spst1g00245 1056 ProSitePatterns Protein kinases ATP-binding region signature. 786 808 IPR017441 GO:0005524
Spst1g00245 1056 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 430 696 - -
Spst1g00245 1056 SUPERFAMILY RNI-like 83 394 - -
Spst1g00245 1056 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 744 855 - -
Spst1g00245 1056 ProSitePatterns Serine/Threonine protein kinases active-site signature. 900 912 IPR008271 GO:0004672|GO:0006468
Spst1g00245 1056 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 190 277 - -
Spst1g00245 1056 ProSiteProfiles Protein kinase domain profile. 780 1054 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst1g00245 1056 SUPERFAMILY Protein kinase-like (PK-like) 758 1051 IPR011009 -
Spst1g00245 1056 SMART serkin_6 780 1055 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g00245 Spst-Chr1 3354003 3357173 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g00245 2 1055 Receptor kinase-like Gene Family AT3G02130 42.957 0.0 803
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XV Spst1g00245 Pkinase 5.1e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00245 - - gmx:100795047 1724.52