Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00240 ATGTCAAGTACTCTTGCGGCAATATTTGGAGGAGCTGCAGGAGCCGTGGCATTGGTAGGGATTGTTATACTTTTATGGTTTTGTTTGTCTCGCCAGAGGAATGTTTCTAGGACTTCCGAGACAGGGTCCTCTGATCCTTCACAAGTGGGAAGACATGGCACAATTGAGTTGCCTGTACGAGATACTAGGCGTTTTGAGATGGAAGAACTATCTTTGGCAACAAAAAGTTTCAGTGAGAAAAATTTGATTGGAGAAGGGAAATTTGGGGAGGTTTACAAGGGTTTACTTCAAGATGGGATGCTTGTAGCCATCAAAAAACGCCGCGGACTAGCTAGTCAGGAATTCGTTGATGAGGTACGCTATCTCTCATCTATTCACCACCGGAATCTCGTCAGTCTTTTAGGCTACTGCCAGGAGAACAATCTCCAGTTTCTTATATATGAATATGTGCCTAATGGAAGCGTCTCCAGTCACTTGTATGGCGCTGGTCAACAACCGAGAGAGAAGCTAGAATTCAAGCATAGACTTTCAATAGCCCAAGGTGCAGCTAAAGGTTTGGCTCATCTTCACTCTTTGAGTCCCCGTTTGGTGCATAAAAATTTCAAAACTGCTAATGTTCTTGTGGATGAAAACTTCATTGCTAAGGTGGCAGATGCTGGACTCCGCAATTTTTTGGGGATAGTTGACATTGCAGGCTCCTCTTCTCAAGGGACAAAAGATGAAATATTCCTTGCATCAGAGGTGAGAGAGTTCAGAAGGTTTTCTGAAAAGAGCGATGTATACAGCTTTGGGGTATTTTTGCTGGAGTTGTTAAGTGGGAAAGAAGCAACAGAATCACCATTTCCGGACTCTAATCAGAATCTGGTTGGATGGGTGCTAAGCAATGAAGACCGTGGCATGATGTCTTACACCATTGATAGGAGATTGGAGAGTAGTTTTACAGCTGAAGGAATGGAAAGTTACATCATGCTCATAATCAGATGCTTAGACCCTTCAAGTGAGAGAAGACCTGCCATGAGCTATGTGGAAATGGAACTTGATAGGATCCTAGAGAAGGAAATGAACTTGACAACAATCATGGGAGAAGGAACCCCAACTGTGACCCTTGGAAGCCAGTTATTCAAATCAACCACATGA 1137 0.4345 MSSTLAAIFGGAAGAVALVGIVILLWFCLSRQRNVSRTSETGSSDPSQVGRHGTIELPVRDTRRFEMEELSLATKSFSEKNLIGEGKFGEVYKGLLQDGMLVAIKKRRGLASQEFVDEVRYLSSIHHRNLVSLLGYCQENNLQFLIYEYVPNGSVSSHLYGAGQQPREKLEFKHRLSIAQGAAKGLAHLHSLSPRLVHKNFKTANVLVDENFIAKVADAGLRNFLGIVDIAGSSSQGTKDEIFLASEVREFRRFSEKSDVYSFGVFLLELLSGKEATESPFPDSNQNLVGWVLSNEDRGMMSYTIDRRLESSFTAEGMESYIMLIIRCLDPSSERRPAMSYVEMELDRILEKEMNLTTIMGEGTPTVTLGSQLFKSTT 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00240 378 ProSiteProfiles Protein kinase domain profile. 77 350 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst1g00240 378 Pfam Protein tyrosine and serine/threonine kinase 80 345 IPR001245 GO:0004672|GO:0006468
Spst1g00240 378 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 13 355 IPR047117 -
Spst1g00240 378 Gene3D Transferase(Phosphotransferase) domain 1 150 363 - -
Spst1g00240 378 FunFam Protein kinase superfamily protein 150 363 - -
Spst1g00240 378 FunFam Protein kinase superfamily protein 42 149 - -
Spst1g00240 378 SUPERFAMILY Protein kinase-like (PK-like) 55 343 IPR011009 -
Spst1g00240 378 Gene3D Phosphorylase Kinase; domain 1 41 149 - -
Spst1g00240 378 ProSitePatterns Protein kinases ATP-binding region signature. 83 106 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g00240 Spst-Chr1 3319185 3321818 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g00240 12 351 Receptor kinase-like Gene Family AT2G39360 36.364 1.49e-59 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXa Spst1g00240 PK_Tyr_Ser-Thr 2e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00240 - - gmx:100305436 677.937