Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00235 ATGCCCCCTTTATTTGTTCGATTACTTCTGAGGTCTGATGTTAATCTGTTCTTAAACTTTTGTGGTCTCGGGGAGTTATGGGAGGTTCTTCAAAATGATATTGATTTGCTAAATCCTCCAGCTGAGCTTGAGAAGAGGAAACACAAACTCAAGCGTCTTGTTCAGTCACCAAACTCTTTCTTCATGGATGTTAAGTGTCAGGGTTGCTTTAACATAACGACGGTGTTCAGCCATTCCCAGACTGTTGTTGTGTGCGGAAACTGCCAGACTGTCTTGTGCCAACCAACTGGTGGACGGGCTAGGTTAACTGAGGGATGCTCCTTTAGGAAGAAGGGAGATTGA 342 0.4444 MPPLFVRLLLRSDVNLFLNFCGLGELWEVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRKKGD 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00235 113 PANTHER 40S RIBOSOMAL PROTEIN S27 29 113 IPR000592 GO:0003735|GO:0005840|GO:0006412
Spst1g00235 113 Hamap 30S ribosomal protein S27e [rps27e]. 51 111 IPR000592 GO:0003735|GO:0005840|GO:0006412
Spst1g00235 113 Pfam Ribosomal protein S27 57 111 IPR000592 GO:0003735|GO:0005840|GO:0006412
Spst1g00235 113 FunFam 40S ribosomal protein S27 28 113 - -
Spst1g00235 113 ProSitePatterns Ribosomal protein S27e signature. 65 97 IPR000592 GO:0003735|GO:0005840|GO:0006412
Spst1g00235 113 SUPERFAMILY Zn-binding ribosomal proteins 57 111 IPR011332 GO:0006412
Spst1g00235 113 Gene3D - 32 112 IPR023407 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g00235 Spst-Chr1 3260029 3262685 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g00235 29 113 Cytoplasmic Ribosomal Protein Gene Family AT3G61110 95.294 3.01e-58 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00235 K02978 - minc:123230388 175.637
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g00235 1 3260029 3262685 Spst1g00235 1 3260029 3262685 ECH