Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00232 ATGTTCTCATCTTTTGCTTGTATAGCGGTTCTTCAAAATGATATTGATTTGCTAAATCCTCCTGCTGAACTTGAGAAGAGGAAACACAAACTCAAGCGTCTTGTTCAGTCACCGAACTCTTTCTTCATGGATGTTAAGTGTCAGGGTTGCTTTAACATAACGACTGTGTTTAGCCACTCTCAGACTGTTGTTGTGTGCGGAAACTGCCAGACTGTCTTGTGCCAACCAACTGGTGGACGGGCTAGGCTAACTGAGGGGTGCTCCTTTAGGAAGAAGGGAGATTGA 285 0.4456 MFSSFACIAVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRKKGD 94
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00232 94 PANTHER 40S RIBOSOMAL PROTEIN S27 5 94 IPR000592 GO:0003735|GO:0005840|GO:0006412
Spst1g00232 94 Hamap 30S ribosomal protein S27e [rps27e]. 32 92 IPR000592 GO:0003735|GO:0005840|GO:0006412
Spst1g00232 94 SUPERFAMILY Zn-binding ribosomal proteins 38 92 IPR011332 GO:0006412
Spst1g00232 94 Gene3D - 13 93 IPR023407 -
Spst1g00232 94 FunFam 40S ribosomal protein S27 9 94 - -
Spst1g00232 94 ProSitePatterns Ribosomal protein S27e signature. 46 78 IPR000592 GO:0003735|GO:0005840|GO:0006412
Spst1g00232 94 Pfam Ribosomal protein S27 38 92 IPR000592 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g00232 Spst-Chr1 3247316 3248092 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g00232 10 94 Cytoplasmic Ribosomal Protein Gene Family AT3G61110 95.294 6.64e-59 173
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00232 K02978 - cmos:111455834 176.792